Лаборатория геномных исследований и вычислительной биологии
Наша история началась в 2004 с создания лаборатории постгеномных исследований в биологии под руководством Кувата Темиргалиевича Момыналиева. C 2009 лабораторией руководила Елена Сергеевна Кострюкова. В 2020 лаборатория постгеномных исследований в биологии и лаборатория биоинформатики – были объединены в одну, получив название лаборатория геномных исследований и вычислительной биологии, возглавляемую Еленой Николаевной Ильиной. С 2022 года ею руководит Ксения Михайловна Климина, команда состоит из семнадцати ученых, шестеро - кандидаты наук.
Сочетание исследований в области геномики и вычислительной биологии позволяет нам успешно реализовывать междисциплинарные проекты. В лаборатории изучается микробиоценоз человека и микроорганизмов, имеющий медицинское значение. Современное оборудование от компаний Illumina, Oxford Nanopore Technologies, Applied Biosystems, Thermo Scientific и Tecan, позволяет проводить анализ геномов и транскриптомов как прокариотических, так и эукариотических видов, исследовать взаимодействия между бактериями и их хозяевами, а также между бактериофагами и бактериями.
Сочетание исследований в области геномики и вычислительной биологии позволяет нам успешно реализовывать междисциплинарные проекты. В лаборатории изучается микробиоценоз человека и микроорганизмов, имеющий медицинское значение. Современное оборудование от компаний Illumina, Oxford Nanopore Technologies, Applied Biosystems, Thermo Scientific и Tecan, позволяет проводить анализ геномов и транскриптомов как прокариотических, так и эукариотических видов, исследовать взаимодействия между бактериями и их хозяевами, а также между бактериофагами и бактериями.
На базе лаборатории выполняются проекты по секвенированию и анализу данных для Центра Коллективного Пользования ФГБУ ФНКЦ ФХМ им. Ю. М. Лопухина ФМБА России.
- приготовление библиотек для различных типов секвенаторов,
- обработка и интерпретация данных секвенирования нового поколения (NGS),
- геномно-транскриптомный анализ разнообразных организмов,
- разработка комплексных биоинформатических пайплайнов, программирование и анализ данных на языках R и Python,
- выполнение масштабных вычислений на собственном вычислительном кластере.
Наши ключевые навыки:
Кандидат биологических наук
Заведующая лабораторией
Климина Ксения Михайловна
E-mail: ppp843[at]yandex[dot]ru
ORCID: 0000-0002-5563-644X
Scopus: 36632252100
- Микробиология и микробиом человека: Исследование структуры и функций микробиоты кишечника, дыхательных путей и микробиома в контексте различных заболеваний.
- Функциональная геномика и метагеномика: Геномные исследования пробиотических бактерий (Bifidobacterium, Lactobacillus и др.), анализ генетических маркеров для идентификации и типирования штаммов, а также изучение роли микробиоты как предиктора эффективности терапии (например, анти-PD1 терапии меланомы).
- Бактериофаги и фаготерапия: Изучение геномов бактериофагов, анализ транскриптомных ответов бактерий на бактериофаги.
- Микробные механизмы устойчивости и взаимодействия: Исследование устойчивости микобактерий к антибиотикам, ответов на стресс, трансформации метаболических путей под действием лекарственных веществ.
- Биоинформатика и системная биология: Применение геномики, транскриптомики, метагеномики для комплексного исследования микроорганизмов и их взаимодействия с хозяином.
Научные интересы:
Научная биография
В 2009 г. закончила физичекий факультет МГУ им. Ломоносова (кафедра Биофизики).
С 2009 по 2021 г. работала в лаборатории генетики микроорганизмов в Институте общей генетики им. Н.И. Вавилова.
В 2017 г. защитила кандидатскую диссертацию по специальности «генетика».
С 2022 - старший научный сотрудник лаборатории геномных исследований и вычислительной биологии ФНКЦ ФХМ.
С 2009 по 2021 г. работала в лаборатории генетики микроорганизмов в Институте общей генетики им. Н.И. Вавилова.
В 2017 г. защитила кандидатскую диссертацию по специальности «генетика».
С 2022 - старший научный сотрудник лаборатории геномных исследований и вычислительной биологии ФНКЦ ФХМ.
Кандидат биологических наук
Старший научный сотрудник
Захаревич Наталья Владимировна
ORCID: 0000-0001-9336-2884
Scopus: 24478874000
ResearcherID: L-3746-2016
Научная биография
В 2014 г. окончила биологический факультет МГУ им. М.В. Ломоносова (кафедра Генетики).
В 2018 г. окончила аспирантуру ИОГен им. Н.И. Вавилова РАН.
В 2019 г. защитила кандидатскую диссертацию по специальности Молекулярная генетика.
С 2015 по 2020 гг. работала в Лаборатории генетики микроорганизмов ИОГен им. Н.И. Вавилова РАН в должности младшего научного сотрудника.
С 2020 по 2022 гг. работала в Лаборатории разработки новых методов молекулярной диагностики заболеваний человека ЦСП ФМБА в должности биолога.
С 2021 по 2023 гг. работала в Департаменте микробиологии Гонконгского Университета в должности научного сотрудника.
С 2025 г. – старший научный сотрудник Лаборатории геномных исследований и вычислительной биологии ФНКЦ ФХМ им. Ю.М. Лопухина.
В 2018 г. окончила аспирантуру ИОГен им. Н.И. Вавилова РАН.
В 2019 г. защитила кандидатскую диссертацию по специальности Молекулярная генетика.
С 2015 по 2020 гг. работала в Лаборатории генетики микроорганизмов ИОГен им. Н.И. Вавилова РАН в должности младшего научного сотрудника.
С 2020 по 2022 гг. работала в Лаборатории разработки новых методов молекулярной диагностики заболеваний человека ЦСП ФМБА в должности биолога.
С 2021 по 2023 гг. работала в Департаменте микробиологии Гонконгского Университета в должности научного сотрудника.
С 2025 г. – старший научный сотрудник Лаборатории геномных исследований и вычислительной биологии ФНКЦ ФХМ им. Ю.М. Лопухина.
Кандидат биологических наук
Старший научный сотрудник
Дьячкова Марина Сергеевна
ORCID: 0000-0003-1337-6237
Scopus: 57191928142
Научные интересы:
- молекулярная эволюция
- сравнительная геномика и филогеномика микроорганизмов
- анализ данных высокопроизводительного секвенирования
ResearcherID: AAU-4657-2020
Специализация: молекулярная генетика, биоинформатика
Научный сотрудник
Ларин Андрей Константинович
ORCID: 0000-0002-9429-792X
Scopus: 55208744100
ResearcherID: E-8761-2011
- генотипирование человека и животных
- широкогеномные и этнические исследования
- поиск генетических маркеров спортивной успешности
- молекулярно-генетические и эпигенетические скрининги с использованием системы iScan
Научные интересы:
Кандидат биологических наук
Научный сотрудник
Веселовский Владимир Александрович
ORCID: 0000-0002-4336-9452
Scopus: 57212411242
ResearcherID: AHI-4385-2022
- Изучение транскриптомных профилей комменсальных бактерий в условиях взаимодействия с иммунной системой хозяина. Исследование молекулярных механизмов взаимодействия лактобацилл и бифидобактерий с иммунной системой.
- Изучение роли микробиоты кишечника в модуляции эффективности противораковой терапии. Влияние микробиоты в формировании ответа на иммунотерапию ингибиторами контрольных точек anti-PD-1.
Научные интересы:
Специализация: молекулярная генетика, метагеномика, транскриптомика, пробиотики, иммунотерапия, полногеномное секвенирование
Младший научный сотрудник
Бабенко Владислав Викторович
ResearcherID: N-5045-2019
Scopus: 55882231600
ORCID: 0000-0003-2242-2127
Младший научный сотрудник
Селезнева Оксана Викторовна
ResearcherID: D-8125-2014
Scopus: 8524924800
Научные интересы:
- секвенирование ДНК методом Сенгера для анализа мутаций и верификации генетических данных.
ORCID: 0000-0003-4861-7141
Младший научный сотрудник
Зорук Полина Юрьевна
ORCID: 0009-0007-3397-2024
- применение методов молекулярной генетики в подготовке библиотек ДНК
- секвенирование на платформах Illumina и Oxford Nanopore Technologies
- метагеномные исследования кишечной микробиоты человека
Научные интересы:
Аспирант ФГБУ ФНКЦ ФХМ им. Ю.М. Лопухина ФМБА России
Младший научный сотрудник
Морозов Максим Денисович
ORCID: 0000-0001-6128-0921
Scopus: 57311246800
ResearcherID: MEO-1875-2025
- Симбионтно-паразитарные взаимодействия: изучение особенностей колонизации различных отделов организма человека микроорганизмами, включая как симбиотические, так и условно-патогенные формы.
- Микробиом и онкология: исследование бактерий с терапевтическим потенциалом в лечении онкологических заболеваний; анализ их воздействия на противоопухолевый иммунный ответ.
Научные интересы:
Аспирант МГУ им. Ломоносова
Младший научный сотрудник
Строкач Александра Андреевна
ORCID: 0009-0009-9470-7640
ResearcherID: KFB-5413-2024
- Исследование взаимодействия микробиоты кишечника и иммунной системы слизистых оболочек
- Изучение влияния состава микробиота кишечника на исход иммунотерапии меланомы и разработка методов её коррекции
Научные интересы:
Специализация: иммунология
Студент МФТИ
Лаборант-исследователь
Романов Михаил Вячеславович
ORCID: 0009-0005-8700-1536
ResearcherID: JTU-7133-2023
- Поиск взаимосвязей состава микробиомов и течения болезней
- Анализ данных NGS
- Метагеномика
Научные интересы:
Студент РНИМУ им. Н. И. Пирогова
Лаборант-исследователь
Штоль Виолетта Владимировна
- механизмы взаимодействия кишечной микробиоты с иммунной системой
Научные интересы:
Совместители:
- Колдман Северина ДановнаНаучный сотрудник, кандидат биологических наук
ORCID: 0000-0002-7496-1213
Scopus: 57195310221
ResearcherID: E-8035-2015 - Колдман Вэйл АсНаучный сотрудник, кандидат биологических наук
ORCID: 0000-0001-6601-7700
Scopus: 14015480300
ResearcherID: I-1027-2015 - Мадан Арина ГеннадиевнаЛаборант-исследователь
ORCID: 0009-0007-5487-380X
Избранные публикации в рецензируемых научных журналах
1) Gut Mycobiome Changes During COVID-19 Disease
Krivonos DV, Fedorov DE, Klimina KM, Veselovsky VA, Kovalchuk SN, Pavlenko AV, Yanushevich OO, Andreev DN, Sokolov FS, Fomenko AK, et al.
Journal of Fungi, 2025; 11(3):194. Q1
2) Vic9 mycobacteriophage: the first subcluster B2 phage isolated in Russia
Zaychikova M, Malakhova M, Bespiatykh D, Kornienko M, Klimina K, Strokach A, Gorodnichev R, German A, Fursov M, Bagrov D, Vnukova A, Gracheva A, Kazyulina A, Shleeva M, Shitikov E
Frontiers in Microbiology, 2025; 15:1513081. Q1
3) Response of Staphylococcus aureus to combination of virulent bacteriophage vB_SauM-515A1 and linezolid
Abdraimova NK, Shitikov EA, Bespiatykh DA, Gorodnichev RB, Klimina KM, Veselovsky VA, Boldyreva DI, Bogdanova AS, Klinov DV, Kornienko MA
Frontiers in Microbiology, 2024; 15:1519312. Q1
4) Age-Related Specificities of the Gut Microbiota Composition of Rhesus Macaques Kept in Captivity
Polyakova VI, Krivonos DV, Klimina KM, Veselovsky VA, Orlov AV, Fedorov DE, Korneenko EV, Penkin LN, Pavlenko AV, Ilina EN, Arshba IM
Molecular Genetics, Microbiology and Virology, 2024; 39:249–258.
5) The ARK2N (C18ORF25) Genetic Variant Is Associated with Muscle Fiber Size and Strength Athlete Status
Çığırtaş R, Bulgay C, Kazan HH, Akman O, Sporiš G, John G, Yusupov RA, Sultanov RI, Zhelankin AV, Semenova EA, Larin AK, Kulemin NA, Generozov EV, Jurko D, Ahmetov II
Metabolites, 2024 Dec 5; 14(12):684. PMID: 39728465; PMCID: PMC11676174. Q1
6) Establishment of Novel High-Grade Serous Ovarian Carcinoma Cell Line OVAR79
Shnaider PV, Malyants IK, Ivanova OM, Gordeeva VS, Svirina EA, Zakharzhevskaya NB, Shagaleeva OY, Selezneva OV, Bogomazova AN, Lukina MM, et al.
International Journal of Molecular Sciences, 2024; 25:13236. Q1
7) Mining Translation Inhibitors by a Unique Peptidyl-Aminonucleoside Synthetase Reveals Cystocin Biosynthesis and Self-Resistance
Alferova VA, Zotova PA, Baranova AA, Guglya EB, Belozerova OA, Pipiya SO, Kudzhaev AM, Logunov SE, Prokopenko YA, Marenkova EA, Marina VI, Novikova EA, Komarova ES, Starodumova IP, Bueva OV, Evtushenko LI, Ariskina EV, Kovalchuk SI, Mineev KS, Babenko VV, Sergiev PV, Lukianov DA, Terekhov SS
International Journal of Molecular Sciences, 2024 Nov 30; 25(23):12901. PMID: 39684615; PMCID: PMC11641026. Q1
8) The effect size of rs521851 in the intron of MAGI2/S-SCAM on HADS-D scores correlates with EAT-26 scores for eating disorders risk
Pinakhina D, Kasyanov E, Rukavishnikov G, Larin AK, Veselovsky VA, Rakitko A, Neznanov N, Kibitov A, Mazo G, Artomov M
Frontiers in Psychiatry, 2024; 15:1416009. Q1
9) High heterogeneity of cross-reactive immunoglobulins in multiple sclerosis presumes combining of B-cell epitopes for diagnostics: a case-control study
Ovchinnikova LA, Eliseev IE, Dzhelad SS, Simaniv TO, Klimina KM, Ivanova M, Ilina EN, Zakharova MN, Illarioshkin SN, Rubtsov YP, Gabibov AG, Lomakin YA
Frontiers in Immunology, 2024; 15:1401156. Q1
10) Multiomics analysis of Staphylococcus aureus ST239 strains resistant to virulent Herelleviridae phages
Kornienko M, Bespiatykh D, Abdraimova N, Gorodnichev R, Gostev V, Boldyreva D, Selezneva O, Veselovsky V, Pobeguts O, Smirnov I, Arapidi G, Klimina K, Shitikov E
Scientific Reports, 2024 Nov 26; 14(1):29375. PMID: 39592862; PMCID: PMC11599779. Q1
11) Transcriptional Responses of Lacticaseibacillus rhamnosus to TNFα, IL-6, IL-8, and IL-10 Cytokines
Klimina KM, Dyachkova MS, Veselovsky VA, Zakharevich NV, Strokach AA, Selezneva OV, Shitikov EA, Bespiatykh DA, Yunes RA, Poluektova EU, Odorskaya MV, Ostroukhova PS, Bruskin SA, Danilenko VN, Olekhnovich EI
Biology (Basel), 2024, 13(11):931. doi: 10.3390/biology13110931. PMID: 39596886. Q1
12) Oropharyngeal resistome remains stable during COVID-19 therapy, while fecal resistome shifts toward a less diverse resistotype
Starikova EV, Galeeva YS, Fedorov DE, Korneenko EV, Speranskaya AS, Selezneva OV, Zoruk PY, Klimina KM, Veselovsky VA, Morozov MD, Boldyreva DI, Olekhnovich EI, Manolov AI, Pavlenko AV, Kozlov IE, Yanushevich OO, Krikheli NI, Levchenko OV, Andreev DN, Sokolov FS, Fomenko AK, Devkota MK, Andreev NG, Zaborovsky AV, Tsaregorodtsev SV, Evdokimov VV, Bely PA, Maev IV, Govorun VM, Ilina EN
iScience, 2024, 27(12):111319. doi: 10.1016/j.isci.2024.111319. PMID: 39640576. Q1
13) Bacteroides vesicles promote functional alterations in the gut microbiota composition
Shagaleeva OY, Kashatnikova DA, Kardonsky DA, Efimov BA, Ivanov VA, Smirnova SV, Evsiev SS, Zubkov EA, Abramova OV, Zorkina YA, Morozova AY, Vorobeva EA, Silantiev AS, Kolesnikova IV, Markelova MI, Olekhnovich EI, Morozov MD, Zoruk PY, Boldyreva DI, Kazakova VD, Vanyushkina AA, Chaplin AV, Grigoryeva TV, Zakharzhevskaya NB
Microbiol Spectr., 2024, 12(11):e0063624. doi: 10.1128/spectrum.00636-24. PMID: 39345205. Q1
14) RNA Editing by ADAR Adenosine Deaminases in the Cell Models of CAG Repeat Expansion Diseases
Kudriavskii VV, Goncharov AO, Eremeev AV, Ruchko ES, Veselovsky VA, Klimina KM, Bogomazova AN, Lagarkova MA, Moshkovskii SA, Kliuchnikova AA
Biochemistry (Mosc), 2024, 89(8):1474-1489. doi: 10.1134/S0006297924080078. PMID: 39245456. Q4
15) Therapy-induced secretion of spliceosomal components mediates pro-survival crosstalk between ovarian cancer cells
Shender VO, Anufrieva KS, Shnaider PV, Arapidi GP, Pavlyukov MS, Ivanova OM, Malyants IK, Stepanov GA, Zhuravlev E, Ziganshin RH, Butenko IO, Bukato ON, Klimina KM, Veselovsky VA, Grigorieva TV, Malanin SY, Aleshikova OI, Slonov AV, Babaeva NA, Ashrafyan LA, Khomyakova E, Evtushenko EG, Lukina MM, Wang Z, Silantiev AS, Nushtaeva AA, Kharlampieva DD, Lazarev VN, Lashkin AI, Arzumanyan LK, Petrushanko IY, Makarov AA, Lebedeva OS, Bogomazova AN, Lagarkova MA, Govorun VM
Nat Commun., 2024, 15:5237. doi: 10.1038/s41467-024-49512-6. PMID: 38898005. Q1
16) Identification of Genomic Predictors of Muscle Fiber Size
Guilherme JPLF, Semenova EA, Kikuchi N, Homma H, Kozuma A, Saito M, Zempo H, Matsumoto S, Kobatake N, Nakazato K, Okamoto T, John G, Yusupov RA, Larin AK, Kulemin NA, Gazizov IM, Generozov EV, Ahmetov II
Cells, 2024, 13(14):1212. doi: 10.3390/cells13141212. PMID: 39056794. Q1
17) Exploring the relationship between caffeine metabolism-related CYP1A2 rs762551 polymorphism and team sport athlete status and training adaptations
Kazan HH, Bulgay C, Zorba E, Dalip M, Ceylan HI, Semenova EA, Larin AK, Kulemin NA, Generozov EV, Ahmetov II, Cerit M
Mol Biol Rep., 2024, 51(1):841. doi: 10.1007/s11033-024-09800-2. PMID: 39042267. Q2
18) Association analysis of indel variants and gene expression identifies MDM4 as a novel locus for skeletal muscle hypertrophy and power athlete status
Kazan HH, Kasakolu A, Koncagul S, Ergun MA, John G, Sultanov RI, Zhelankin AV, Semenova EA, Yusupov RA, Kulemin NA, Larin AK, Generozov EV, Bulgay C, Ahmetov II
Exp Physiol., 2024. doi: 10.1113/EP091992. PMID: 39041487. Q2
19) Effect of ADORA2A Gene Polymorphism and Acute Caffeine Supplementation on Hormonal Response to Resistance Exercise
Rahimi MR, Semenova EA, John G, Fallah F, Larin AK, Generozov EV, Ahmetov II
Nutrients, 2024, 16(12):1803. doi: 10.3390/nu16121803. PMID: 38931158. Q1
20) Unraveling the adaptive strategies of Mycoplasma hominis through proteogenomic profiling of clinical isolates
Pobeguts OV, Galaymina MA, Sikamov KV, Urazaeva DR, Avshalumov AS, Mikhailycheva MV, Babenko VV, Smirnov IP, Gorbachev AY
Front Cell Infect Microbiol., 2024, 14:1398706. doi: 10.3389/fcimb.2024.1398706. PMID: 38756231. Q1
21) Microbial Signatures in COVID-19: Distinguishing Mild and Severe Disease via Gut Microbiota
Galeeva JS, Fedorov DE, Starikova EV, Manolov AI, Pavlenko AV, Selezneva OV, Klimina KM, Veselovsky VA, Morozov MD, Yanushevich OO, Krikheli NI, Levchenko OV, Andreev DN, Sokolov FS, Fomenko AK, Devkota MK, Andreev NG, Zaborovskiy AV, Bely PA, Tsaregorodtsev SV, Evdokimov VV, Maev IV, Govorun VM, Ilina EN
Biomedicines, 2024, 12(5):996. doi: 10.3390/biomedicines12050996. PMID: 38790958. Q1
22) Effect of the consumption of brazzein and monellin, two recombinant sweet-tasting proteins, on rat gut microbiota
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23) A hybrid pathway for self-sustained luminescence
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24) TP63-TRIM29 axis regulates enhancer methylation and chromosomal instability in prostate cancer
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Epigenetics Chromatin, 2024, 17:6. doi: 10.1186/s13072-024-00529-7. Q1
25) Systemic metabolic depletion of gut microbiome undermines responsiveness to melanoma immunotherapy
Zakharevich NV, Morozov MD, Kanaeva VA, Filippov MS, Zyubko TI, Ivanov AB, Ulyantsev VI, Klimina KM, Olekhnovich EI
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26) Variants of a major DNA satellite discriminate parental subgenomes in a hybrid parthenogenetic lizard Darevskia unisexualis
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27) An improved and extended dual-index multiplexed 16S rRNA sequencing for the Illumina HiSeq and MiSeq platform
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BMC Genom Data, 2024, 25:8. doi: 10.1186/s12863-024-01192-3. Q3
28) An improved pathway for autonomous bioluminescence imaging in eukaryotes
Shakhova ES, Karataeva TA, Markina NM, Mitiouchkina T, Palkina KA, Perfilov MM, Wood MG, Hoang TT, Hall MP, Fakhranurova LI, Alekberova AE, Malyshevskaia AK, Gorbachev DA, Bugaeva EN, Pletneva LK, Babenko VV, Boldyreva DI, Gorokhovatsky AY, Balakireva AV, Gao F, Choob VV, Encell LP, Wood KV, Yampolsky IV, Sarkisyan KS, Mishin AS
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29) Old Sulfidic Ore Tailing Dump: Ground Features, Mineralogy, Biodiversity
Muravyov M, Radchenko D, Tsupkina M, Babenko V, Panyushkina A
Minerals, 2024, 14(1):23. doi: 10.3390/min14010023. Q2
30) Snapper: high-sensitive detection of methylation motifs based on Oxford Nanopore reads
Konanov DN, Babenko VV, Belova AM, Madan AG, Boldyreva DI, Glushenko OE, Butenko IO, Fedorov DE, Manolov AI, Krivonos DV, Lazarev VN, Govorun VM, Ilina EN
Bioinformatics, 2023, 39(11):btad702. doi: 10.1093/bioinformatics/btad702
31) To the Origin of Fungi: Analysis of MFS Transporters of First Assembled Aphelidium Genome
Pozdnyakov IR, Potapenko EV, Nassonova ES, Babenko VV, Boldyreva DI, Tcvetkova VS, Karpov SA
J Fungi, 2023, 9(10):1021. doi: 10.3390/jof9101021. PMID: 37888277
32) Novel Derivatives of Quinoxaline-2-carboxylic Acid 1,4-Dioxides as Antimycobacterial Agents
Frolova SG, Vatlin AA, Maslov DA, Yusuf B, Buravchenko GI, Bekker OB, Klimina KM, Smirnova SV, Shnakhova LM, Malyants IK, Lashkin AI, Tian X, Alam MS, Zatonsky GV, Zhang T, Shchekotikhin AE, Danilenko VN
Pharmaceuticals, 2023, 16(11):1565. doi: 10.3390/ph16111565. PMID: 38004430
33) Microbial communities of the upper respiratory tract in mild and severe COVID-19 patients
Galeeva JS, Starikova EV, Fedorov DE, Manolov AI, Pavlenko AV, Konanov DN, Krivonos DV, Babenko VV, Klimina KM, Veselovsky VA, Morozov MD, Gafurov IR, Gaifullina RF, Govorun VM, Ilina EN
Front Microbiomes, 2023, 2:1067019. doi: 10.3389/frmbi.2023.1067019
34) The metastable associations of bacteriophages and Erwinia amylovora
Besarab NV, Letarova MA, Babenko VV, Belalov IS, Golomidova AK, Kulikov EE, Lagonenko AL, Evtushenkov AN, Letarov AV
Arch Microbiol, 2023, 205(5):214. doi: 10.1007/s00203-023-03550-8
35) Effects of ultrasound-induced stress on gut microbiota of mice
Chernukha I, Vasilevskaya E, Klimina K, Yunes R, Kupaeva N, Tolmacheva G, Kibitkina A, Danilenko V, Karabanov S, Fedulova L
Vet World, 2023, 16(5):929-938. doi: 10.14202/vetworld.2023.929-938
36) Association of ACTN3 R577X Polymorphism with Elite Basketball Player Status and Training Responses
Demirci B, Bulgay C, Ceylan Hİ, Öztürk ME, Öztürk D, Kazan HH, Ergun MA, Cerit M, Semenova EA, Larin AK, Generozov EV, Ahmetov II, Cepicka L
Genes (Basel), 2023, 14(6):1190. doi: 10.3390/genes14061190
37) An Efficient 2D Protocol for Differentiation of iPSCs into Mature Postmitotic Dopaminergic Neurons: Application for Modeling Parkinson's Disease
Lebedeva OS, Sharova EI, Grekhnev DA, Skorodumova LO, Kopylova IV, Vassina EM, Oshkolova A, Novikova IV, Krisanova AV, Olekhnovich EI, Vigont VA, Kaznacheyeva EV, Bogomazova AN, Lagarkova MA
Int J Mol Sci, 2023, 24(8):7297. doi: 10.3390/ijms24087297
38) Exome-Wide Association Study of Competitive Performance in Elite Athletes
Bulgay C, Kasakolu A, Kazan HH, Mijaica R, Zorba E, Akman O, Bayraktar I, Ekmekci R, Koncagul S, Ulucan K, Semenova EA, Larin AK, Kulemin NA, Generozov EV, Balint L, Badicu G, Ahmetov II, Ergun MA
Genes (Basel), 2023, 14(3):660. doi: 10.3390/genes14030660
39) The ADORA2A TT Genotype Is Associated with Anti-Inflammatory Effects of Caffeine in Response to Resistance Exercise and Habitual Coffee Intake
Rahimi MR, Semenova EA, Larin AK, Kulemin NA, Generozov EV, Łubkowska B, Ahmetov II, Golpasandi H
Nutrients, 2023, 15(7):1634. doi: 10.3390/nu15071634
40) Isolation and Characterization of the First Zobellviridae Family Bacteriophage Infecting Klebsiella pneumoniae
Gorodnichev RB, Kornienko MA, Malakhova MV, Bespiatykh DA, Manuvera VA, Selezneva OV, Veselovsky VA, Bagrov DV, Zaychikova MV, Osnach VA, Shabalina AV, Goloshchapov OV, Bespyatykh JA, Dolgova AS, Shitikov EA
Int J Mol Sci, 2023, 24(4):4038. doi: 10.3390/ijms24044038
41) Consistent Stool Metagenomic Biomarkers Associated with the Response To Melanoma Immunotherapy
Olekhnovich EI, Ivanov AB, Babkina AA, Sokolov AA, Ulyantsev VI, Fedorov DE, Ilina EN
mSystems, 2023 Apr 27;8(2):e0102322. doi: 10.1128/msystems.01023-22. Epub 2023 Feb 21.
42) RALF Peptides Modulate Immune Response in the Moss Physcomitrium patens
Mamaeva A, Lyapina I, Knyazev A, Golub N, Mollaev T, Chudinova E, Elansky S, Babenko VV, Veselovsky VA, Klimina KM, Gribova T, Kharlampieva D, Lazarev V, Fesenko I
Front Plant Sci., 2023 Jan 27;14:1077301. doi: 10.3389/fpls.2023.1077301.
43) KIBRA Gene Variant Is Associated with Ability in Chess and Science
Ahmetov II, Valeeva EV, Yerdenova MB, Datkhabayeva GK, Bouzid A, Bhamidimarri PM, Sharafetdinova LM, Egorova ES, Semenova EA, Gabdrakhmanova LJ, Yusupov RA, Larin AK, Kulemin NA, Generozov EV, Hamoudi R, Kustubayeva AM, Rees T
Genes (Basel), 2023 Jan 13;14(1):204. doi: 10.3390/genes14010204.
44) The Gene Expression Profile Differs in Growth Phases of the Bifidobacterium Longum Culture
Veselovsky VA, Dyachkova MS, Bespiatykh DA, Yunes RA, Shitikov EA, Polyaeva PS, Danilenko VN, Olekhnovich EI, Klimina KM
Microorganisms, 2022 Aug 21;10(8):1683. doi: 10.3390/microorganisms10081683.
45) Comparative Genomic, Transcriptomic, and Proteomic Analysis of the Limosilactobacillus fermentum U-21 Strain Promising for the Creation of a Pharmabiotic
Poluektova EU, Mavletova DA, Odorskaya MV, Marsova MV, Klimina KM, Koshenko TA, Yunes RA, Danilenko VN
Russ J Genet., 2022;58:1079–1090. https://doi.org/10.1134/S1022795422090125.
46) Composition of Oropharyngeal Microbiota in Patients with COVID-19 of Different Pneumonia Severity
Starikova EV, Galeeva JS, Andreev DN, Sokolov PS, Fedorov DE, Manolov AI, Pavlenko AV, Klimina KM, Veselovsky VA, Zaborovsky AV, Evdokimov VV, Andreev NG, Devkota MK, Fomenko AK, Khar'kovskii VA, Asadulin PO, Kucher SA, Cheremushkina AS, Yanushevich OO, Maev IV, Krikheli NI, Levchenko OV, Ilina EN, Govorun VM
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47) Two Novel Erwinia amylovora Bacteriophages, Loshitsa2 and Micant, Isolated in Belarus
Besarab NV, Letarov AV, Kulikov EE, Babenko VV, Belalov IS, Lagonenko AL, Golomidova AK, Evtushenkov AN
Arch Virol., 2022 Dec;167(12):2633-2642. doi: 10.1007/s00705-022-05601-9. Epub 2022 Oct 7.
48) Genome-Wide Association Study Identifies CDKN1A as a Novel Locus Associated with Muscle Fiber Composition
Semenova EA, Zempo H, Miyamoto-Mikami E, Kumagai H, Larin AK, Sultanov RI, Babalyan KA, Zhelankin AV, Tobina T, Shiose K, Kakigi R, Tsuzuki T, Ichinoseki-Sekine N, Kobayashi H, Naito H, Burniston J, Generozov EV, Fuku N, Ahmetov II
Cells., 2022 Dec 2;11(23):3910. doi: 10.3390/cells11233910.
49) Genome-Wide Association Study of Exercise-Induced Fat Loss Efficiency
Bojarczuk A, Boulygina EA, Dzitkowska-Zabielska M, Łubkowska B, Leońska-Duniec A, Egorova ES, Semenova EA, Andryushchenko LB, Larin AK, Generozov EV, Cięszczyk P, Ahmetov II
Genes (Basel), 2022 Oct 29;13(11):1975. doi: 10.3390/genes13111975.
50) 16S rRNA Gene Sequencing Data of the Upper Respiratory Tract Microbiome in the SARS-CoV-2 Infected Patients
Galeeva J, Babenko V, Bakhtyev R, Baklaushev V, Balykova L, Bashkirov P, Bespyatykh J, Blagonravova A, Boldyreva D, Fedorov D, Gafurov I, Gaifullina R, Galova E, Gospodaryk A, Ilina E, Ivanov K, Kharlampieva D, Khromova P, Klimina K, Kolontarev K, Kolyshkina N, Koritsky A, Kuropatkin V, Lazarev V, Manolov A, Manuvera V, Matyushkina D, Morozov M, Moskaleva E, Musarova V, Ogarkov O, Orlova E, Pavlenko A, Petrova A, Pozhenko N, Pushkar D, Rumyantsev A, Rumyantsev S, Rumyantsev V, Rychkova L, Samoilov A, Shirokova I, Sinkov V, Solovieva S, Starikova E, Tikhonova P, Trifonova G, Troitsky A, Tulichev A, Udalov Y, Varizhuk A, Vasiliev A, Veselovsky V, Vereshchagin R, Volnukhin A, Yusubalieva G, Govorun V
Data Brief, 2022 Feb;40:107770. doi: 10.1016/j.dib.2021.107770. Epub 2021 Dec 29. PMID: 34977286; PMCID: PMC8715627.
51) Genetic Profile of Sports Climbing Athletes from Three Different Ethnicities
Saito M, Ginszt M, Semenova EA, Massidda M, Huminska-Lisowska K, Michałowska-Sawczyn M, Homma H, Cięszczyk P, Okamoto T, Larin AK, Generozov EV, Majcher P, Nakazato K, Ahmetov II, Kikuchi N
Biol Sport., 2022 Oct;39(4):913-919. doi: 10.5114/biolsport.2022.109958. Epub 2021 Nov 10.
52) Polygenic Profile of Elite Strength Athletes
Moreland E, Borisov OV, Semenova EA, Larin AK, Andryushchenko ON, Andryushchenko LB, Generozov EV, Williams AG, Ahmetov II
J Strength Cond Res., 2022 Sep 1;36(9):2509-2514. doi: 10.1519/JSC.0000000000003901. Epub 2020 Dec 3.
53) The BDNF-Increasing Allele is Associated with Increased Proportion of Fast-Twitch Muscle Fibers, Handgrip Strength, and Power Athlete Status
Guilherme JPLF, Semenova EA, Borisov OV, Kostryukova ES, Vepkhvadze TF, Lysenko EA, Andryushchenko ON, Andryushchenko LB, Lednev EM, Larin AK, Bondareva EA, Generozov EV, Ahmetov II
J Strength Cond Res., 2022 Jul 1;36(7):1884-1889. doi: 10.1519/JSC.0000000000003756. Epub 2020 Dec 9.
54) Global Transcriptomic Response of Staphylococcus aureus to Virulent Bacteriophage Infection
Kuptsov N, Kornienko M, Bespiatykh D, Gorodnichev R, Klimina K, Veselovsky V, Shitikov E
Viruses, 2022 Mar 9;14(3):567. doi: 10.3390/v14030567.
55) Genome-Wide Transcriptional Response of Mycobacterium smegmatis MC2155 to G-Quadruplex Ligands BRACO-19 and TMPyP4
Shitikov E, Bespiatykh D, Malakhova M, Bespyatykh J, Bodoev I, Vedekhina T, Zaychikova M, Veselovsky V, Klimina K, Ilina E, Varizhuk A
Front Microbiol., 2022 Mar 4;13:817024. doi: 10.3389/fmicb.2022.817024
56) BioCAT: Search for Biosynthetic Gene Clusters Producing Nonribosomal Peptides with Known Structure
Konanov DN, Krivonos DV, Ilina EN, Babenko VV
Comput Struct Biotechnol J., 2022 Mar 4;20:1218-1226. doi: 10.1016/j.csbj.2022.02.013.
57) Is COL1A1 Gene rs1107946 Polymorphism Associated with Sport Climbing Status and Flexibility?
Saito M, Ginszt M, Semenova EA, Massidda M, Huminska-Lisowska K, Michałowska-Sawczyn M, Homma H, Cięszczyk P, Okamoto T, Larin AK, Generozov EV, Majcher P, Nakazato K, Ahmetov II, Kikuchi N
Genes (Basel), 2022 Feb 23;13(3):403. doi: 10.3390/genes13030403. PMID: 35327955.
58) Genomic Predictors of Testosterone Levels are Associated with Muscle Fiber Size and Strength
Guilherme JPLF, Semenova EA, Borisov OV, Larin AK, Moreland E, Generozov EV, Ahmetov II
Eur J Appl Physiol., 2022 Feb;122(2):415-423. doi: 10.1007/s00421-021-04851-w. Epub 2021 Nov 18.
59) Association of Genetically Predicted BCAA Levels with Muscle Fiber Size in Athletes Consuming Protein
Hall ECR, Semenova EA, Bondareva EA, Andryushchenko LB, Larin AK, Cięszczyk P, Generozov EV, Ahmetov II
Genes (Basel), 2022 Feb 23;13(3):397. doi: 10.3390/genes13030397.
60) Deep Functional Profiling of Wild Animal Microbiomes Reveals Probiotic Bacillus pumilus Strains with a Common Biosynthetic Fingerprint
Baranova MN, Kudzhaev AM, Mokrushina YA, Babenko VV, Kornienko MA, Malakhova MV, Yudin VG, Rubtsova MP, Zalevsky A, Belozerova OA, Kovalchuk S, Zhuravlev YN, Ilina EN, Gabibov AG, Smirnov IV, Terekhov SS
Int J Mol Sci., 2022 Jan 21;23(3):1168. doi: 10.3390/ijms23031168.
61) Streptocinnamides A and B, Depsipeptides from Streptomyces sp. KMM 9044
Makarieva TN, Romanenko LA, Mineev KS, Shubina LK, Guglya EB, Kalinovskaya NI, Ivanchina NV, Guzii AG, Belozerova OA, Kovalchuk SI, Popov RS, Denisenko VA, Mikhailov VV, Babenko VV, Ilina EN, Malakhova MV, Terekhov SS, Kudzhaev AM, Dmitrenok PS, Yampolsky IV, Stonik VA
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62) Thymidine Utilisation Pathway is a Novel Phenotypic Switch of Mycoplasma hominis
Fisunov GY, Pobeguts OV, Ladygina VG, Zubov AI, Galyamina MA, Kovalchuk SI, Ziganshin RK, Evsyutina DV, Matyushkina DS, Butenko IO, Bukato ON, Veselovsky VA, Semashko TA, Klimina KM, Levina GA, Barhatova OI, Rakovskaya IV
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63) The Effects of Levilactobacillus brevis on the Physiological Parameters and Gut Microbiota Composition of Rats Subjected to Desynchronosis
Olekhnovich EI, Batotsyrenova EG, Yunes RA, Kashuro VA, Poluektova EU, Veselovsky VA, Ilina EN, Danilenko VN, Klimina KM
Microb Cell Fact., 2021 Dec 20;20(1):226. doi:10.1186/s12934-021-01716-x.
64) DNA G-Quadruplexes Contribute to CTCF Recruitment
Tikhonova P, Pavlova I, Isaakova E, Tsvetkov V, Bogomazova A, Vedekhina T, Luzhin AV, Sultanov R, Severov V, Klimina K, Kantidze OL, Pozmogova G, Lagarkova M, Varizhuk A
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65) Transcriptomic Profile of Mycobacterium smegmatis in Response to an Imidazo[1,2-b][1,2,4,5]tetrazine Reveals Its Possible Impact on Iron Metabolism
Vatlin AA, Shitikov EA, Shahbaaz M, Bespiatykh DA, Klimina KM, Christoffels A, Danilenko VN, Maslov DA
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66) Novel Klebsiella pneumoniae K23-Specific Bacteriophages From Different Families: Similarity of Depolymerases and Their Therapeutic Potential
Gorodnichev RB, Volozhantsev NV, Krasilnikova VM, Bodoev IN, Kornienko MA, Kuptsov NS, Popova AV, Makarenko GI, Manolov AI, Slukin PV, Bespiatykh DA, Verevkin VV, Denisenko EA, Kulikov EE, Veselovsky VA, Malakhova MV, Dyatlov IA, Ilina EN, Shitikov EA
Front Microbiol., 2021 Aug 9;12:669618. doi: 10.3389/fmicb.2021.669618.
67) Separation of Donor and Recipient Microbial Diversity Allows Determination of Taxonomic and Functional Features of Gut Microbiota Restructuring following Fecal Transplantation
Olekhnovich EI, Ivanov AB, Ulyantsev VI, Ilina EN
mSystems., 2021 Aug 31;6(4):e0081121. doi: 10.1128/mSystems.00811-21. Epub 2021 Aug 17.
68) Drift of the Subgingival Periodontal Microbiome during Chronic Periodontitis in Type 2 Diabetes Mellitus Patients
Balmasova IP, Olekhnovich EI, Klimina KM, Korenkova AA, Vakhitova MT, Babaev EA, Ovchinnikova LA, Lomakin YA, Smirnov IV, Tsarev VN, Mkrtumyan AM, Belogurov AA Jr, Gabibov AG, Ilina EN, Arutyunov SD
Pathogens., 2021 Apr 22;10(5):504. doi: 10.3390/pathogens10050504.
69) Free SARS-CoV-2 Spike Protein S1 Particles May Play a Role in the Pathogenesis of COVID-19 Infection
Letarov AV, Babenko VV, Kulikov EE
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70) Genes and Weightlifting Performance
Kikuchi N, Moreland E, Homma H, Semenova EA, Saito M, Larin AK, Kobatake N, Yusupov RA, Okamoto T, Nakazato K, Williams AG, Generozov EV, Ahmetov II
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71) CKM Gene rs8111989 Polymorphism and Power Athlete Status
Ginevičienė V, Jakaitienė A, Utkus A, Hall ECR, Semenova EA, Andryushchenko LB, Larin AK, Moreland E, Generozov EV, Ahmetov II
Genes., 2021 Sep 25;12(10):1499. doi: 10.3390/genes12101499.
72) Are Genome-Wide Association Study Identified Single-Nucleotide Polymorphisms Associated With Sprint Athletic Status? A Replication Study With 3 Different Cohorts
Guilherme JPLF, Semenova EA, Zempo H, Martins GL, Lancha Junior AH, Miyamoto-Mikami E, Kumagai H, Tobina T, Shiose K, Kakigi R, Tsuzuki T, Ichinoseki-Sekine N, Kobayashi H, Naito H, Borisov OV, Kostryukova ES, Kulemin NA, Larin AK, Generozov EV, Fuku N, Ahmetov II
Int J Sports Physiol Perform., 2021 Apr 1;16(4):489-495. doi: 10.1123/ijspp.2019-1032.
73) The MCT1 Gene Glu490Asp Polymorphism (rs1049434) Is Associated with Endurance Athlete Status, Lower Blood Lactate Accumulation, and Higher Maximum Oxygen Uptake
Guilherme JPLF, Bosnyák E, Semenova EA, Szmodis M, Griff A, Móra Á, Almási G, Trájer E, Udvardy A, Kostryukova ES, Borisov OV, Larin AK, Andryushchenko LB, Akimov EB, Generozov EV, Ahmetov II, Tóth M, Junior AHL
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74) Identification of Mutations Conferring Tryptanthrin Resistance to Mycobacterium smegmatis
Frolova SG, Klimina KM, Kumar R, Vatlin AA, Salunke DB, Kendrekar P, Danilenko VN, Maslov DA
Antibiotics., 2020 Dec 23;10(1):6. doi: 10.3390/antibiotics10010006.
75) Intestinal Microbiome Modulates the Response to Antitumor Immunotherapy
Olekhnovich EI, Manolov AI, Pavlenko AV, Konanov DN, Fedorov DE, Tikhonova PO, Glushchenko OE, Ilina EN
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76) Transcriptional Landscape of Staphylococcus aureusTranscriptional Landscape of Staphylococcus aureus Kayvirus Bacteriophage vB_SauM-515A1
Kornienko M, Fisunov G, Bespiatykh D, Kuptsov N, Gorodnichev R, Klimina K, Kulikov E, Ilina E, Letarov A, Shitikov E
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77) Contribution of Podoviridae and Myoviridae bacteriophages to the effectiveness of anti-staphylococcal therapeutic cocktails
Kornienko M, Kuptsov N, Gorodnichev R, Bespiatykh D, Guliaev A, Letarova M, Kulikov E, Veselovsky V, Malakhova M, Letarov A, Ilina E, Shitikov E
Scientific Reports. 2020 Oct 29;10(1):18612. doi: 10.1038/s41598-020-75637-x. Q1
78) Metabolic Changes of Mycobacterium tuberculosisMetabolic Changes of Mycobacterium tuberculosis during the Anti-Tuberculosis Therapy
Bespyatykh J, Shitikov E, Bespiatykh D, Guliaev A, Klimina K, Veselovsky V, Arapidi G, Dogonadze M, Zhuravlev V, Ilina E, Govorun V
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79) Aureolic Acid Group of Agents as Potential Antituberculosis Drugs
Bespyatykh J, Bespiatykh D, Malakhova M, Klimina K, Bespyatykh A, Varizhuk A, Tevyashova A, Nikolenko T, Pozmogova G, Ilina E, Shitikov E
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80) Intestinal microbiome as a predictor of the anti-PD-1 therapy success: metagenomic data analysis
Fedorov DE, Olekhnovich EI, Pavlenko AV, Klimina KM, Pokataev IA, Manolov AI, Konanov DN, Veselovsky VA, Ilina EN
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81) Gene Networks Underlying the Resistance of Bifidobacterium longumGene Networks Underlying the Resistance of Bifidobacterium longum to Inflammatory Factors
Veselovsky VA, Dyachkova MS, Menyaylo EA, Polyaeva PS, Olekhnovich EI, Shitikov EA, Bespiatykh DA, Semashko TA, Kasianov AS, Ilina EN, Danilenko VN, Klimina KM
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82) Toxin-Antitoxin Systems: A Tool for Taxonomic Analysis of Human Intestinal Microbiota
Klimina KM, Voroshilova VN, Poluektova EU, Veselovsky VA, Yunes RA, Kovtun AS, Kudryavtseva AV, Kasianov AS, Danilenko VN
Toxins. 2020 Jun 12;12(6):388. doi: 10.3390/toxins12060388. Q1
83) miRNAs expression signature potentially associated with lymphatic dissemination in locally advanced prostate cancer
Pudova EA, Krasnov GS, Nyushko KM, Kobelyatskaya AA, Savvateeva MV, Poloznikov AA, Dolotkazin DR, Klimina KM, Guvatova ZG, Simanovsky SA, Gladysh NS, Tokarev AT, Melnikova NV, Dmitriev AA, Alekseev BY, Kaprin AD, Kiseleva MV, Snezhkina AV, Kudryavtseva AV
BMC Medical Genomics. 2020 Sep 18;13(Suppl 8):129. doi: 10.1186/s12920-020-00788-9. Q2
84) The ecogenomics of dsDNA bacteriophages in feces of stabled and feral horses
Babenko VV, Millard A, Kulikov EE, Spasskaya NN, Letarova MA, Konanov DN, Belalov IS, Letarov AV
Computational and Structural Biotechnology Journal. 2020 Nov 10;18:3457–3467. doi: 10.1016/j.csbj.2020.10.036. Q1
85) Correction to: Draft genome sequences of Hirudo medicinalis and salivary transcriptome of three closely related medicinal leeches
Babenko VV, Podgorny OV, Manuvera VA, Kasianov AS, Manolov AI, Grafskaia EN, Shirokov DA, Kurdyumov AS, Vinogradov DV, Nikitina AS, Kovalchuk SI, Anikanov NA, Butenko IO, Pobeguts OV, Matyushkina DS, Rakitina DV, Kostryukova ES, Zgoda VG, Baskova IP, Trukhan VM, Gelfand MS, Govorun VM, Schiöth HB, Lazarev VN
BMC Genomics. 2020 Jul 22;21(1):503. doi: 10.1186/s12864-020-06897-0. Erratum for: BMC Genomics. 2020 Apr 29;21(1):331. Q1
86) Novel Bradykinin-Potentiating Peptides and Three-Finger Toxins from Viper Venom: Combined NGS Venom Gland Transcriptomics and Quantitative Venom Proteomics of the Azemiops feae Viper
Babenko VV, Ziganshin RH, Weise C, Dyachenko I, Shaykhutdinova E, Murashev AN, Zhmak M, Starkov V, Hoang AN, Tsetlin V, Utkin Y
Biomedicines. 2020 Jul 28;8(8):249. doi: 10.3390/biomedicines8080249.
87) The Hirudo Medicinalis Microbiome Is a Source of New Antimicrobial Peptides
Grafskaia E, Pavlova E, Babenko VV, Latsis I, Malakhova M, Lavrenova V, Bashkirov P, Belousov D, Klinov D, Lazarev V
International Journal of Molecular Sciences. 2020 Sep 27;21(19):7141. doi: 10.3390/ijms21197141.
88) Genome Sequences of a Green-Colored Chlorobium phaeovibrioides Strain Containing Two Plasmids and a Closely Related Plasmid-Free Brown-Colored Strain
Boldyreva DI, Babenko VV, Kanygina AV, Lunina ON, Letarova MA, Kostryukova ES, Savvichev AS, Gorlenko VM, Letarov AV
Microbiology Resource Announcements. 2020 Jan 9;9(2):e01172-19. doi: 10.1128/MRA.01172-19.
89) Draft genome sequences of Hirudo medicinalis and salivary transcriptome of three closely related medicinal leeches
Babenko VV, Podgorny OV, Manuvera VA, Kasianov AS, Manolov AI, Grafskaia EN, Shirokov DA, Kurdyumov AS, Vinogradov DV, Nikitina AS, Kovalchuk SI, Anikanov NA, Butenko IO, Pobeguts OV, Matyushkina DS, Rakitina DV, Kostryukova ES, Zgoda VG, Baskova IP, Trukhan VM, Gelfand MS, Govorun VM, Schiöth HB, Lazarev VN
BMC Genomics. 2020 Apr 29;21(1):331. doi: 10.1186/s12864-020-6748-0. Erratum in: BMC Genomics. 2020 Jul 22;21(1):503.
90) Evaluation of metabolites levels in feces of patients with inflammatory bowel diseases
Zhgun ES, Kislun YV, Kalachniuk TN, Veselovsky VA, Urban AS, Tikhonova PO, Pavlenko AV, Ilchenko GN, Ilina EN
Biomeditsinskaya Khimiya. 2020 May;66(3):233–240. Russian. doi: 10.18097/PBMC20206603233.
91) Polygenic Profile of Elite Strength Athletes
Moreland E, Borisov OV, Semenova EA, Larin AK, Andryushchenko ON, Andryushchenko LB, Generozov EV, Williams AG, Ahmetov II
Journal of Strength and Conditioning Research. 2020 Dec 3. doi: 10.1519/JSC.0000000000003901.
92) The GALNTL6 Gene rs558129 Polymorphism Is Associated With Power Performance
Díaz Ramírez J, Álvarez-Herms J, Castañeda-Babarro A, Larruskain J, Ramírez de la Piscina X, Borisov OV, Semenova EA, Kostryukova ES, Kulemin NA, Andryushchenko ON, Larin AK, Andryushchenko LB, Generozov EV, Ahmetov II, Odriozola A
Journal of Strength and Conditioning Research. 2020 Nov;34(11):3031–3036. doi: 10.1519/JSC.0000000000003814.
93) Whole genome sequencing of elite athletes
Boulygina EA, Borisov OV, Valeeva EV, Semenova EA, Kostryukova ES, Kulemin NA, Larin AK, Nabiullina RM, Mavliev FA, Akhatov AM, Andryushchenko ON, Andryushchenko LB, Zmijewski P, Generozov EV, Ahmetov II
Biology of Sport. 2020 Sep;37(3):295–304. doi: 10.5114/biolsport.2020.96272.
94) Striated muscle-specific serine/threonine-protein kinase beta segregates with high versus low responsiveness to endurance exercise training
Kusić D, Connolly J, Kainulainen H, Semenova EA, Borisov OV, Larin AK, Popov DV, Generozov EV, Ahmetov II, Britton SL, Koch LG, Burniston JG
Physiological Genomics. 2020 Jan 1;52(1):35–46. doi: 10.1152/physiolgenomics.00103.2019.
95) The association of HFE gene H63D polymorphism with endurance athlete status and aerobic capacity: novel findings and a meta-analysis
Semenova EA, Miyamoto-Mikami E, Akimov EB, Al-Khelaifi F, Murakami H, Zempo H, Kostryukova ES, Kulemin NA, Larin AK, Borisov OV, Miyachi M, Popov DV, Boulygina EA, Takaragawa M, Kumagai H, Naito H, Pushkarev VP, Dyatlov DA, Lekontsev EV, Pushkareva YE, Andryushchenko LB, Elrayess MA, Generozov EV, Fuku N, Ahmetov II
European Journal of Applied Physiology. 2020 Mar;120(3):665–673. doi: 10.1007/s00421-020-04306-8.
96) Genome-Wide Association Study Reveals a Novel Association Between MYBPC3 Gene Polymorphism, Endurance Athlete Status, Aerobic Capacity and Steroid Metabolism
Al-Khelaifi F, Yousri NA, Diboun I, Semenova EA, Kostryukova ES, Kulemin NA, Borisov OV, Andryushchenko LB, Larin AK, Generozov EV, Miyamoto-Mikami E, Murakami H, Zempo H, Miyachi M, Takaragawa M, Kumagai H, Naito H, Fuku N, Abraham D, Hingorani A, Donati F, Botrè F, Georgakopoulos C, Suhre K, Ahmetov II, Albagha O, Elrayess MA
Frontiers in Genetics. 2020 Jun 16;11:595. doi: 10.3389/fgene.2020.00595.
97) DNA methylation across the genome in aged human skeletal muscle tissue and muscle-derived cells: the role of HOX genes and physical activity
Turner DC, Gorski PP, Maasar MF, Seaborne RA, Baumert P, Brown AD, Kitchen MO, Erskine RM, Dos-Remedios I, Voisin S, Eynon N, Sultanov RI, Borisov OV, Larin AK, Semenova EA, Popov DV, Generozov EV, Stewart CE, Drust B, Owens DJ, Ahmetov II, Sharples AP
Scientific Reports. 2020 Sep 21;10(1):15360. doi: 10.1038/s41598-020-72730-z.
1) Gut Mycobiome Changes During COVID-19 Disease
Krivonos DV, Fedorov DE, Klimina KM, Veselovsky VA, Kovalchuk SN, Pavlenko AV, Yanushevich OO, Andreev DN, Sokolov FS, Fomenko AK, et al.
Journal of Fungi, 2025; 11(3):194. Q1
2) Vic9 mycobacteriophage: the first subcluster B2 phage isolated in Russia
Zaychikova M, Malakhova M, Bespiatykh D, Kornienko M, Klimina K, Strokach A, Gorodnichev R, German A, Fursov M, Bagrov D, Vnukova A, Gracheva A, Kazyulina A, Shleeva M, Shitikov E
Frontiers in Microbiology, 2025; 15:1513081. Q1
3) Response of Staphylococcus aureus to combination of virulent bacteriophage vB_SauM-515A1 and linezolid
Abdraimova NK, Shitikov EA, Bespiatykh DA, Gorodnichev RB, Klimina KM, Veselovsky VA, Boldyreva DI, Bogdanova AS, Klinov DV, Kornienko MA
Frontiers in Microbiology, 2024; 15:1519312. Q1
4) Age-Related Specificities of the Gut Microbiota Composition of Rhesus Macaques Kept in Captivity
Polyakova VI, Krivonos DV, Klimina KM, Veselovsky VA, Orlov AV, Fedorov DE, Korneenko EV, Penkin LN, Pavlenko AV, Ilina EN, Arshba IM
Molecular Genetics, Microbiology and Virology, 2024; 39:249–258.
5) The ARK2N (C18ORF25) Genetic Variant Is Associated with Muscle Fiber Size and Strength Athlete Status
Çığırtaş R, Bulgay C, Kazan HH, Akman O, Sporiš G, John G, Yusupov RA, Sultanov RI, Zhelankin AV, Semenova EA, Larin AK, Kulemin NA, Generozov EV, Jurko D, Ahmetov II
Metabolites, 2024 Dec 5; 14(12):684. PMID: 39728465; PMCID: PMC11676174. Q1
6) Establishment of Novel High-Grade Serous Ovarian Carcinoma Cell Line OVAR79
Shnaider PV, Malyants IK, Ivanova OM, Gordeeva VS, Svirina EA, Zakharzhevskaya NB, Shagaleeva OY, Selezneva OV, Bogomazova AN, Lukina MM, et al.
International Journal of Molecular Sciences, 2024; 25:13236. Q1
7) Mining Translation Inhibitors by a Unique Peptidyl-Aminonucleoside Synthetase Reveals Cystocin Biosynthesis and Self-Resistance
Alferova VA, Zotova PA, Baranova AA, Guglya EB, Belozerova OA, Pipiya SO, Kudzhaev AM, Logunov SE, Prokopenko YA, Marenkova EA, Marina VI, Novikova EA, Komarova ES, Starodumova IP, Bueva OV, Evtushenko LI, Ariskina EV, Kovalchuk SI, Mineev KS, Babenko VV, Sergiev PV, Lukianov DA, Terekhov SS
International Journal of Molecular Sciences, 2024 Nov 30; 25(23):12901. PMID: 39684615; PMCID: PMC11641026. Q1
8) The effect size of rs521851 in the intron of MAGI2/S-SCAM on HADS-D scores correlates with EAT-26 scores for eating disorders risk
Pinakhina D, Kasyanov E, Rukavishnikov G, Larin AK, Veselovsky VA, Rakitko A, Neznanov N, Kibitov A, Mazo G, Artomov M
Frontiers in Psychiatry, 2024; 15:1416009. Q1
9) High heterogeneity of cross-reactive immunoglobulins in multiple sclerosis presumes combining of B-cell epitopes for diagnostics: a case-control study
Ovchinnikova LA, Eliseev IE, Dzhelad SS, Simaniv TO, Klimina KM, Ivanova M, Ilina EN, Zakharova MN, Illarioshkin SN, Rubtsov YP, Gabibov AG, Lomakin YA
Frontiers in Immunology, 2024; 15:1401156. Q1
10) Multiomics analysis of Staphylococcus aureus ST239 strains resistant to virulent Herelleviridae phages
Kornienko M, Bespiatykh D, Abdraimova N, Gorodnichev R, Gostev V, Boldyreva D, Selezneva O, Veselovsky V, Pobeguts O, Smirnov I, Arapidi G, Klimina K, Shitikov E
Scientific Reports, 2024 Nov 26; 14(1):29375. PMID: 39592862; PMCID: PMC11599779. Q1
11) Transcriptional Responses of Lacticaseibacillus rhamnosus to TNFα, IL-6, IL-8, and IL-10 Cytokines
Klimina KM, Dyachkova MS, Veselovsky VA, Zakharevich NV, Strokach AA, Selezneva OV, Shitikov EA, Bespiatykh DA, Yunes RA, Poluektova EU, Odorskaya MV, Ostroukhova PS, Bruskin SA, Danilenko VN, Olekhnovich EI
Biology (Basel), 2024, 13(11):931. doi: 10.3390/biology13110931. PMID: 39596886. Q1
12) Oropharyngeal resistome remains stable during COVID-19 therapy, while fecal resistome shifts toward a less diverse resistotype
Starikova EV, Galeeva YS, Fedorov DE, Korneenko EV, Speranskaya AS, Selezneva OV, Zoruk PY, Klimina KM, Veselovsky VA, Morozov MD, Boldyreva DI, Olekhnovich EI, Manolov AI, Pavlenko AV, Kozlov IE, Yanushevich OO, Krikheli NI, Levchenko OV, Andreev DN, Sokolov FS, Fomenko AK, Devkota MK, Andreev NG, Zaborovsky AV, Tsaregorodtsev SV, Evdokimov VV, Bely PA, Maev IV, Govorun VM, Ilina EN
iScience, 2024, 27(12):111319. doi: 10.1016/j.isci.2024.111319. PMID: 39640576. Q1
13) Bacteroides vesicles promote functional alterations in the gut microbiota composition
Shagaleeva OY, Kashatnikova DA, Kardonsky DA, Efimov BA, Ivanov VA, Smirnova SV, Evsiev SS, Zubkov EA, Abramova OV, Zorkina YA, Morozova AY, Vorobeva EA, Silantiev AS, Kolesnikova IV, Markelova MI, Olekhnovich EI, Morozov MD, Zoruk PY, Boldyreva DI, Kazakova VD, Vanyushkina AA, Chaplin AV, Grigoryeva TV, Zakharzhevskaya NB
Microbiol Spectr., 2024, 12(11):e0063624. doi: 10.1128/spectrum.00636-24. PMID: 39345205. Q1
14) RNA Editing by ADAR Adenosine Deaminases in the Cell Models of CAG Repeat Expansion Diseases
Kudriavskii VV, Goncharov AO, Eremeev AV, Ruchko ES, Veselovsky VA, Klimina KM, Bogomazova AN, Lagarkova MA, Moshkovskii SA, Kliuchnikova AA
Biochemistry (Mosc), 2024, 89(8):1474-1489. doi: 10.1134/S0006297924080078. PMID: 39245456. Q4
15) Therapy-induced secretion of spliceosomal components mediates pro-survival crosstalk between ovarian cancer cells
Shender VO, Anufrieva KS, Shnaider PV, Arapidi GP, Pavlyukov MS, Ivanova OM, Malyants IK, Stepanov GA, Zhuravlev E, Ziganshin RH, Butenko IO, Bukato ON, Klimina KM, Veselovsky VA, Grigorieva TV, Malanin SY, Aleshikova OI, Slonov AV, Babaeva NA, Ashrafyan LA, Khomyakova E, Evtushenko EG, Lukina MM, Wang Z, Silantiev AS, Nushtaeva AA, Kharlampieva DD, Lazarev VN, Lashkin AI, Arzumanyan LK, Petrushanko IY, Makarov AA, Lebedeva OS, Bogomazova AN, Lagarkova MA, Govorun VM
Nat Commun., 2024, 15:5237. doi: 10.1038/s41467-024-49512-6. PMID: 38898005. Q1
16) Identification of Genomic Predictors of Muscle Fiber Size
Guilherme JPLF, Semenova EA, Kikuchi N, Homma H, Kozuma A, Saito M, Zempo H, Matsumoto S, Kobatake N, Nakazato K, Okamoto T, John G, Yusupov RA, Larin AK, Kulemin NA, Gazizov IM, Generozov EV, Ahmetov II
Cells, 2024, 13(14):1212. doi: 10.3390/cells13141212. PMID: 39056794. Q1
17) Exploring the relationship between caffeine metabolism-related CYP1A2 rs762551 polymorphism and team sport athlete status and training adaptations
Kazan HH, Bulgay C, Zorba E, Dalip M, Ceylan HI, Semenova EA, Larin AK, Kulemin NA, Generozov EV, Ahmetov II, Cerit M
Mol Biol Rep., 2024, 51(1):841. doi: 10.1007/s11033-024-09800-2. PMID: 39042267. Q2
18) Association analysis of indel variants and gene expression identifies MDM4 as a novel locus for skeletal muscle hypertrophy and power athlete status
Kazan HH, Kasakolu A, Koncagul S, Ergun MA, John G, Sultanov RI, Zhelankin AV, Semenova EA, Yusupov RA, Kulemin NA, Larin AK, Generozov EV, Bulgay C, Ahmetov II
Exp Physiol., 2024. doi: 10.1113/EP091992. PMID: 39041487. Q2
19) Effect of ADORA2A Gene Polymorphism and Acute Caffeine Supplementation on Hormonal Response to Resistance Exercise
Rahimi MR, Semenova EA, John G, Fallah F, Larin AK, Generozov EV, Ahmetov II
Nutrients, 2024, 16(12):1803. doi: 10.3390/nu16121803. PMID: 38931158. Q1
20) Unraveling the adaptive strategies of Mycoplasma hominis through proteogenomic profiling of clinical isolates
Pobeguts OV, Galaymina MA, Sikamov KV, Urazaeva DR, Avshalumov AS, Mikhailycheva MV, Babenko VV, Smirnov IP, Gorbachev AY
Front Cell Infect Microbiol., 2024, 14:1398706. doi: 10.3389/fcimb.2024.1398706. PMID: 38756231. Q1
21) Microbial Signatures in COVID-19: Distinguishing Mild and Severe Disease via Gut Microbiota
Galeeva JS, Fedorov DE, Starikova EV, Manolov AI, Pavlenko AV, Selezneva OV, Klimina KM, Veselovsky VA, Morozov MD, Yanushevich OO, Krikheli NI, Levchenko OV, Andreev DN, Sokolov FS, Fomenko AK, Devkota MK, Andreev NG, Zaborovskiy AV, Bely PA, Tsaregorodtsev SV, Evdokimov VV, Maev IV, Govorun VM, Ilina EN
Biomedicines, 2024, 12(5):996. doi: 10.3390/biomedicines12050996. PMID: 38790958. Q1
22) Effect of the consumption of brazzein and monellin, two recombinant sweet-tasting proteins, on rat gut microbiota
Veselovsky VA, Boldyreva DI, Olekhnovich EI, Klimina KM, Babenko VV, Zakharevich NV, Larin AK, Morozov MD, Zoruk PY, Sergiev PV, Dontsova OA, Maev IV, Novik TS, Kotlobay AA, Lazarev VN, Lagarkova MA
Front Nutr., 2024, 11:1362529. doi: 10.3389/fnut.2024.1362529. Q1
23) A hybrid pathway for self-sustained luminescence
Palkina KA, Karataeva TA, Perfilov MM, Fakhranurova LI, Markina NM, Somermeyer LG, Garcia-Perez E, Vazquez-Vilar M, Rodriguez-Rodriguez M, Vazquez-Vilriales V, Shakhova ES, Mitiouchkina T, Belozerova OA, Kovalchuk SI, Alekberova A, Malyshevskaia AK, Bugaeva EN, Guglya EB, Balakireva A, Sytov N, Bezlikhotnova A, Boldyreva DI, Babenko VV, Kondrashov FA, Choob VV, Orzaez D, Yampolsky IV, Mishin AS, Sarkisyan KS
Sci Adv., 2024, 10(10):eadk1992. doi: 10.1126/sciadv.adk1992. PMID: 38457503. Q1
24) TP63-TRIM29 axis regulates enhancer methylation and chromosomal instability in prostate cancer
Sultanov R, Mulyukina A, Zubkova O, Fedoseeva A, Bogomazova A, Klimina K, Larin A, Zatsepin T, Prikazchikova T, Lukina M, Bogomiakova M, Sharova E, Generozov E, Lagarkova M, Arapidi G
Epigenetics Chromatin, 2024, 17:6. doi: 10.1186/s13072-024-00529-7. Q1
25) Systemic metabolic depletion of gut microbiome undermines responsiveness to melanoma immunotherapy
Zakharevich NV, Morozov MD, Kanaeva VA, Filippov MS, Zyubko TI, Ivanov AB, Ulyantsev VI, Klimina KM, Olekhnovich EI
Life Sci Alliance, 2024, 7(5):e202302480. doi: 10.26508/lsa.202302480. Q1
26) Variants of a major DNA satellite discriminate parental subgenomes in a hybrid parthenogenetic lizard Darevskia unisexualis
Nikitin P, Sidorov S, Liehr T, Klimina K, Al-Rikabi A, Korchagin V, Kolomiets O, Arakelyan M, Spangenberg V
J Exp Zool B Mol Dev Evol., 2024, 1-12. doi: 10.1002/jez.b.23244. Q1
27) An improved and extended dual-index multiplexed 16S rRNA sequencing for the Illumina HiSeq and MiSeq platform
Larin AK, Klimina KM, Veselovsky VA, Olekhnovich EI, Morozov MD, Boldyreva DI, Yunes RA, Manolov AI, Fedorov DE, Pavlenko AV, Galeeva YS, Starikova EV, Ilina EN
BMC Genom Data, 2024, 25:8. doi: 10.1186/s12863-024-01192-3. Q3
28) An improved pathway for autonomous bioluminescence imaging in eukaryotes
Shakhova ES, Karataeva TA, Markina NM, Mitiouchkina T, Palkina KA, Perfilov MM, Wood MG, Hoang TT, Hall MP, Fakhranurova LI, Alekberova AE, Malyshevskaia AK, Gorbachev DA, Bugaeva EN, Pletneva LK, Babenko VV, Boldyreva DI, Gorokhovatsky AY, Balakireva AV, Gao F, Choob VV, Encell LP, Wood KV, Yampolsky IV, Sarkisyan KS, Mishin AS
Nat Methods, 2024. doi: 10.1038/s41592-023-02152-y. Q1
29) Old Sulfidic Ore Tailing Dump: Ground Features, Mineralogy, Biodiversity
Muravyov M, Radchenko D, Tsupkina M, Babenko V, Panyushkina A
Minerals, 2024, 14(1):23. doi: 10.3390/min14010023. Q2
30) Snapper: high-sensitive detection of methylation motifs based on Oxford Nanopore reads
Konanov DN, Babenko VV, Belova AM, Madan AG, Boldyreva DI, Glushenko OE, Butenko IO, Fedorov DE, Manolov AI, Krivonos DV, Lazarev VN, Govorun VM, Ilina EN
Bioinformatics, 2023, 39(11):btad702. doi: 10.1093/bioinformatics/btad702
31) To the Origin of Fungi: Analysis of MFS Transporters of First Assembled Aphelidium Genome
Pozdnyakov IR, Potapenko EV, Nassonova ES, Babenko VV, Boldyreva DI, Tcvetkova VS, Karpov SA
J Fungi, 2023, 9(10):1021. doi: 10.3390/jof9101021. PMID: 37888277
32) Novel Derivatives of Quinoxaline-2-carboxylic Acid 1,4-Dioxides as Antimycobacterial Agents
Frolova SG, Vatlin AA, Maslov DA, Yusuf B, Buravchenko GI, Bekker OB, Klimina KM, Smirnova SV, Shnakhova LM, Malyants IK, Lashkin AI, Tian X, Alam MS, Zatonsky GV, Zhang T, Shchekotikhin AE, Danilenko VN
Pharmaceuticals, 2023, 16(11):1565. doi: 10.3390/ph16111565. PMID: 38004430
33) Microbial communities of the upper respiratory tract in mild and severe COVID-19 patients
Galeeva JS, Starikova EV, Fedorov DE, Manolov AI, Pavlenko AV, Konanov DN, Krivonos DV, Babenko VV, Klimina KM, Veselovsky VA, Morozov MD, Gafurov IR, Gaifullina RF, Govorun VM, Ilina EN
Front Microbiomes, 2023, 2:1067019. doi: 10.3389/frmbi.2023.1067019
34) The metastable associations of bacteriophages and Erwinia amylovora
Besarab NV, Letarova MA, Babenko VV, Belalov IS, Golomidova AK, Kulikov EE, Lagonenko AL, Evtushenkov AN, Letarov AV
Arch Microbiol, 2023, 205(5):214. doi: 10.1007/s00203-023-03550-8
35) Effects of ultrasound-induced stress on gut microbiota of mice
Chernukha I, Vasilevskaya E, Klimina K, Yunes R, Kupaeva N, Tolmacheva G, Kibitkina A, Danilenko V, Karabanov S, Fedulova L
Vet World, 2023, 16(5):929-938. doi: 10.14202/vetworld.2023.929-938
36) Association of ACTN3 R577X Polymorphism with Elite Basketball Player Status and Training Responses
Demirci B, Bulgay C, Ceylan Hİ, Öztürk ME, Öztürk D, Kazan HH, Ergun MA, Cerit M, Semenova EA, Larin AK, Generozov EV, Ahmetov II, Cepicka L
Genes (Basel), 2023, 14(6):1190. doi: 10.3390/genes14061190
37) An Efficient 2D Protocol for Differentiation of iPSCs into Mature Postmitotic Dopaminergic Neurons: Application for Modeling Parkinson's Disease
Lebedeva OS, Sharova EI, Grekhnev DA, Skorodumova LO, Kopylova IV, Vassina EM, Oshkolova A, Novikova IV, Krisanova AV, Olekhnovich EI, Vigont VA, Kaznacheyeva EV, Bogomazova AN, Lagarkova MA
Int J Mol Sci, 2023, 24(8):7297. doi: 10.3390/ijms24087297
38) Exome-Wide Association Study of Competitive Performance in Elite Athletes
Bulgay C, Kasakolu A, Kazan HH, Mijaica R, Zorba E, Akman O, Bayraktar I, Ekmekci R, Koncagul S, Ulucan K, Semenova EA, Larin AK, Kulemin NA, Generozov EV, Balint L, Badicu G, Ahmetov II, Ergun MA
Genes (Basel), 2023, 14(3):660. doi: 10.3390/genes14030660
39) The ADORA2A TT Genotype Is Associated with Anti-Inflammatory Effects of Caffeine in Response to Resistance Exercise and Habitual Coffee Intake
Rahimi MR, Semenova EA, Larin AK, Kulemin NA, Generozov EV, Łubkowska B, Ahmetov II, Golpasandi H
Nutrients, 2023, 15(7):1634. doi: 10.3390/nu15071634
40) Isolation and Characterization of the First Zobellviridae Family Bacteriophage Infecting Klebsiella pneumoniae
Gorodnichev RB, Kornienko MA, Malakhova MV, Bespiatykh DA, Manuvera VA, Selezneva OV, Veselovsky VA, Bagrov DV, Zaychikova MV, Osnach VA, Shabalina AV, Goloshchapov OV, Bespyatykh JA, Dolgova AS, Shitikov EA
Int J Mol Sci, 2023, 24(4):4038. doi: 10.3390/ijms24044038
41) Consistent Stool Metagenomic Biomarkers Associated with the Response To Melanoma Immunotherapy
Olekhnovich EI, Ivanov AB, Babkina AA, Sokolov AA, Ulyantsev VI, Fedorov DE, Ilina EN
mSystems, 2023 Apr 27;8(2):e0102322. doi: 10.1128/msystems.01023-22. Epub 2023 Feb 21.
42) RALF Peptides Modulate Immune Response in the Moss Physcomitrium patens
Mamaeva A, Lyapina I, Knyazev A, Golub N, Mollaev T, Chudinova E, Elansky S, Babenko VV, Veselovsky VA, Klimina KM, Gribova T, Kharlampieva D, Lazarev V, Fesenko I
Front Plant Sci., 2023 Jan 27;14:1077301. doi: 10.3389/fpls.2023.1077301.
43) KIBRA Gene Variant Is Associated with Ability in Chess and Science
Ahmetov II, Valeeva EV, Yerdenova MB, Datkhabayeva GK, Bouzid A, Bhamidimarri PM, Sharafetdinova LM, Egorova ES, Semenova EA, Gabdrakhmanova LJ, Yusupov RA, Larin AK, Kulemin NA, Generozov EV, Hamoudi R, Kustubayeva AM, Rees T
Genes (Basel), 2023 Jan 13;14(1):204. doi: 10.3390/genes14010204.
44) The Gene Expression Profile Differs in Growth Phases of the Bifidobacterium Longum Culture
Veselovsky VA, Dyachkova MS, Bespiatykh DA, Yunes RA, Shitikov EA, Polyaeva PS, Danilenko VN, Olekhnovich EI, Klimina KM
Microorganisms, 2022 Aug 21;10(8):1683. doi: 10.3390/microorganisms10081683.
45) Comparative Genomic, Transcriptomic, and Proteomic Analysis of the Limosilactobacillus fermentum U-21 Strain Promising for the Creation of a Pharmabiotic
Poluektova EU, Mavletova DA, Odorskaya MV, Marsova MV, Klimina KM, Koshenko TA, Yunes RA, Danilenko VN
Russ J Genet., 2022;58:1079–1090. https://doi.org/10.1134/S1022795422090125.
46) Composition of Oropharyngeal Microbiota in Patients with COVID-19 of Different Pneumonia Severity
Starikova EV, Galeeva JS, Andreev DN, Sokolov PS, Fedorov DE, Manolov AI, Pavlenko AV, Klimina KM, Veselovsky VA, Zaborovsky AV, Evdokimov VV, Andreev NG, Devkota MK, Fomenko AK, Khar'kovskii VA, Asadulin PO, Kucher SA, Cheremushkina AS, Yanushevich OO, Maev IV, Krikheli NI, Levchenko OV, Ilina EN, Govorun VM
Ter Arkh., 2022 Oct 12;94(8):963-972. Russian. doi: 10.26442/00403660.2022.08.201780.
47) Two Novel Erwinia amylovora Bacteriophages, Loshitsa2 and Micant, Isolated in Belarus
Besarab NV, Letarov AV, Kulikov EE, Babenko VV, Belalov IS, Lagonenko AL, Golomidova AK, Evtushenkov AN
Arch Virol., 2022 Dec;167(12):2633-2642. doi: 10.1007/s00705-022-05601-9. Epub 2022 Oct 7.
48) Genome-Wide Association Study Identifies CDKN1A as a Novel Locus Associated with Muscle Fiber Composition
Semenova EA, Zempo H, Miyamoto-Mikami E, Kumagai H, Larin AK, Sultanov RI, Babalyan KA, Zhelankin AV, Tobina T, Shiose K, Kakigi R, Tsuzuki T, Ichinoseki-Sekine N, Kobayashi H, Naito H, Burniston J, Generozov EV, Fuku N, Ahmetov II
Cells., 2022 Dec 2;11(23):3910. doi: 10.3390/cells11233910.
49) Genome-Wide Association Study of Exercise-Induced Fat Loss Efficiency
Bojarczuk A, Boulygina EA, Dzitkowska-Zabielska M, Łubkowska B, Leońska-Duniec A, Egorova ES, Semenova EA, Andryushchenko LB, Larin AK, Generozov EV, Cięszczyk P, Ahmetov II
Genes (Basel), 2022 Oct 29;13(11):1975. doi: 10.3390/genes13111975.
50) 16S rRNA Gene Sequencing Data of the Upper Respiratory Tract Microbiome in the SARS-CoV-2 Infected Patients
Galeeva J, Babenko V, Bakhtyev R, Baklaushev V, Balykova L, Bashkirov P, Bespyatykh J, Blagonravova A, Boldyreva D, Fedorov D, Gafurov I, Gaifullina R, Galova E, Gospodaryk A, Ilina E, Ivanov K, Kharlampieva D, Khromova P, Klimina K, Kolontarev K, Kolyshkina N, Koritsky A, Kuropatkin V, Lazarev V, Manolov A, Manuvera V, Matyushkina D, Morozov M, Moskaleva E, Musarova V, Ogarkov O, Orlova E, Pavlenko A, Petrova A, Pozhenko N, Pushkar D, Rumyantsev A, Rumyantsev S, Rumyantsev V, Rychkova L, Samoilov A, Shirokova I, Sinkov V, Solovieva S, Starikova E, Tikhonova P, Trifonova G, Troitsky A, Tulichev A, Udalov Y, Varizhuk A, Vasiliev A, Veselovsky V, Vereshchagin R, Volnukhin A, Yusubalieva G, Govorun V
Data Brief, 2022 Feb;40:107770. doi: 10.1016/j.dib.2021.107770. Epub 2021 Dec 29. PMID: 34977286; PMCID: PMC8715627.
51) Genetic Profile of Sports Climbing Athletes from Three Different Ethnicities
Saito M, Ginszt M, Semenova EA, Massidda M, Huminska-Lisowska K, Michałowska-Sawczyn M, Homma H, Cięszczyk P, Okamoto T, Larin AK, Generozov EV, Majcher P, Nakazato K, Ahmetov II, Kikuchi N
Biol Sport., 2022 Oct;39(4):913-919. doi: 10.5114/biolsport.2022.109958. Epub 2021 Nov 10.
52) Polygenic Profile of Elite Strength Athletes
Moreland E, Borisov OV, Semenova EA, Larin AK, Andryushchenko ON, Andryushchenko LB, Generozov EV, Williams AG, Ahmetov II
J Strength Cond Res., 2022 Sep 1;36(9):2509-2514. doi: 10.1519/JSC.0000000000003901. Epub 2020 Dec 3.
53) The BDNF-Increasing Allele is Associated with Increased Proportion of Fast-Twitch Muscle Fibers, Handgrip Strength, and Power Athlete Status
Guilherme JPLF, Semenova EA, Borisov OV, Kostryukova ES, Vepkhvadze TF, Lysenko EA, Andryushchenko ON, Andryushchenko LB, Lednev EM, Larin AK, Bondareva EA, Generozov EV, Ahmetov II
J Strength Cond Res., 2022 Jul 1;36(7):1884-1889. doi: 10.1519/JSC.0000000000003756. Epub 2020 Dec 9.
54) Global Transcriptomic Response of Staphylococcus aureus to Virulent Bacteriophage Infection
Kuptsov N, Kornienko M, Bespiatykh D, Gorodnichev R, Klimina K, Veselovsky V, Shitikov E
Viruses, 2022 Mar 9;14(3):567. doi: 10.3390/v14030567.
55) Genome-Wide Transcriptional Response of Mycobacterium smegmatis MC2155 to G-Quadruplex Ligands BRACO-19 and TMPyP4
Shitikov E, Bespiatykh D, Malakhova M, Bespyatykh J, Bodoev I, Vedekhina T, Zaychikova M, Veselovsky V, Klimina K, Ilina E, Varizhuk A
Front Microbiol., 2022 Mar 4;13:817024. doi: 10.3389/fmicb.2022.817024
56) BioCAT: Search for Biosynthetic Gene Clusters Producing Nonribosomal Peptides with Known Structure
Konanov DN, Krivonos DV, Ilina EN, Babenko VV
Comput Struct Biotechnol J., 2022 Mar 4;20:1218-1226. doi: 10.1016/j.csbj.2022.02.013.
57) Is COL1A1 Gene rs1107946 Polymorphism Associated with Sport Climbing Status and Flexibility?
Saito M, Ginszt M, Semenova EA, Massidda M, Huminska-Lisowska K, Michałowska-Sawczyn M, Homma H, Cięszczyk P, Okamoto T, Larin AK, Generozov EV, Majcher P, Nakazato K, Ahmetov II, Kikuchi N
Genes (Basel), 2022 Feb 23;13(3):403. doi: 10.3390/genes13030403. PMID: 35327955.
58) Genomic Predictors of Testosterone Levels are Associated with Muscle Fiber Size and Strength
Guilherme JPLF, Semenova EA, Borisov OV, Larin AK, Moreland E, Generozov EV, Ahmetov II
Eur J Appl Physiol., 2022 Feb;122(2):415-423. doi: 10.1007/s00421-021-04851-w. Epub 2021 Nov 18.
59) Association of Genetically Predicted BCAA Levels with Muscle Fiber Size in Athletes Consuming Protein
Hall ECR, Semenova EA, Bondareva EA, Andryushchenko LB, Larin AK, Cięszczyk P, Generozov EV, Ahmetov II
Genes (Basel), 2022 Feb 23;13(3):397. doi: 10.3390/genes13030397.
60) Deep Functional Profiling of Wild Animal Microbiomes Reveals Probiotic Bacillus pumilus Strains with a Common Biosynthetic Fingerprint
Baranova MN, Kudzhaev AM, Mokrushina YA, Babenko VV, Kornienko MA, Malakhova MV, Yudin VG, Rubtsova MP, Zalevsky A, Belozerova OA, Kovalchuk S, Zhuravlev YN, Ilina EN, Gabibov AG, Smirnov IV, Terekhov SS
Int J Mol Sci., 2022 Jan 21;23(3):1168. doi: 10.3390/ijms23031168.
61) Streptocinnamides A and B, Depsipeptides from Streptomyces sp. KMM 9044
Makarieva TN, Romanenko LA, Mineev KS, Shubina LK, Guglya EB, Kalinovskaya NI, Ivanchina NV, Guzii AG, Belozerova OA, Kovalchuk SI, Popov RS, Denisenko VA, Mikhailov VV, Babenko VV, Ilina EN, Malakhova MV, Terekhov SS, Kudzhaev AM, Dmitrenok PS, Yampolsky IV, Stonik VA
Org Lett., 2022 Jun 30. doi: 10.1021/acs.orglett.2c01714.
62) Thymidine Utilisation Pathway is a Novel Phenotypic Switch of Mycoplasma hominis
Fisunov GY, Pobeguts OV, Ladygina VG, Zubov AI, Galyamina MA, Kovalchuk SI, Ziganshin RK, Evsyutina DV, Matyushkina DS, Butenko IO, Bukato ON, Veselovsky VA, Semashko TA, Klimina KM, Levina GA, Barhatova OI, Rakovskaya IV
J Med Microbiol., 2022 Jan;71(1):001468. doi: 10.1099/jmm.0.001468.
63) The Effects of Levilactobacillus brevis on the Physiological Parameters and Gut Microbiota Composition of Rats Subjected to Desynchronosis
Olekhnovich EI, Batotsyrenova EG, Yunes RA, Kashuro VA, Poluektova EU, Veselovsky VA, Ilina EN, Danilenko VN, Klimina KM
Microb Cell Fact., 2021 Dec 20;20(1):226. doi:10.1186/s12934-021-01716-x.
64) DNA G-Quadruplexes Contribute to CTCF Recruitment
Tikhonova P, Pavlova I, Isaakova E, Tsvetkov V, Bogomazova A, Vedekhina T, Luzhin AV, Sultanov R, Severov V, Klimina K, Kantidze OL, Pozmogova G, Lagarkova M, Varizhuk A
Int J Mol Sci., 2021 Jun 30;22(13):7090. doi: 10.3390/ijms22137090.
65) Transcriptomic Profile of Mycobacterium smegmatis in Response to an Imidazo[1,2-b][1,2,4,5]tetrazine Reveals Its Possible Impact on Iron Metabolism
Vatlin AA, Shitikov EA, Shahbaaz M, Bespiatykh DA, Klimina KM, Christoffels A, Danilenko VN, Maslov DA
Front Microbiol., 2021 Aug 4;12:724042. doi: 10.3389/fmicb.2021.724042..
66) Novel Klebsiella pneumoniae K23-Specific Bacteriophages From Different Families: Similarity of Depolymerases and Their Therapeutic Potential
Gorodnichev RB, Volozhantsev NV, Krasilnikova VM, Bodoev IN, Kornienko MA, Kuptsov NS, Popova AV, Makarenko GI, Manolov AI, Slukin PV, Bespiatykh DA, Verevkin VV, Denisenko EA, Kulikov EE, Veselovsky VA, Malakhova MV, Dyatlov IA, Ilina EN, Shitikov EA
Front Microbiol., 2021 Aug 9;12:669618. doi: 10.3389/fmicb.2021.669618.
67) Separation of Donor and Recipient Microbial Diversity Allows Determination of Taxonomic and Functional Features of Gut Microbiota Restructuring following Fecal Transplantation
Olekhnovich EI, Ivanov AB, Ulyantsev VI, Ilina EN
mSystems., 2021 Aug 31;6(4):e0081121. doi: 10.1128/mSystems.00811-21. Epub 2021 Aug 17.
68) Drift of the Subgingival Periodontal Microbiome during Chronic Periodontitis in Type 2 Diabetes Mellitus Patients
Balmasova IP, Olekhnovich EI, Klimina KM, Korenkova AA, Vakhitova MT, Babaev EA, Ovchinnikova LA, Lomakin YA, Smirnov IV, Tsarev VN, Mkrtumyan AM, Belogurov AA Jr, Gabibov AG, Ilina EN, Arutyunov SD
Pathogens., 2021 Apr 22;10(5):504. doi: 10.3390/pathogens10050504.
69) Free SARS-CoV-2 Spike Protein S1 Particles May Play a Role in the Pathogenesis of COVID-19 Infection
Letarov AV, Babenko VV, Kulikov EE
Biochemistry (Mosc)., 2021 Mar;86(3):257-261. doi: 10.1134/S0006297921030032.
70) Genes and Weightlifting Performance
Kikuchi N, Moreland E, Homma H, Semenova EA, Saito M, Larin AK, Kobatake N, Yusupov RA, Okamoto T, Nakazato K, Williams AG, Generozov EV, Ahmetov II
Genes (Basel)., 2021 Dec 23;13(1):25. doi: 10.3390/genes13010025.
71) CKM Gene rs8111989 Polymorphism and Power Athlete Status
Ginevičienė V, Jakaitienė A, Utkus A, Hall ECR, Semenova EA, Andryushchenko LB, Larin AK, Moreland E, Generozov EV, Ahmetov II
Genes., 2021 Sep 25;12(10):1499. doi: 10.3390/genes12101499.
72) Are Genome-Wide Association Study Identified Single-Nucleotide Polymorphisms Associated With Sprint Athletic Status? A Replication Study With 3 Different Cohorts
Guilherme JPLF, Semenova EA, Zempo H, Martins GL, Lancha Junior AH, Miyamoto-Mikami E, Kumagai H, Tobina T, Shiose K, Kakigi R, Tsuzuki T, Ichinoseki-Sekine N, Kobayashi H, Naito H, Borisov OV, Kostryukova ES, Kulemin NA, Larin AK, Generozov EV, Fuku N, Ahmetov II
Int J Sports Physiol Perform., 2021 Apr 1;16(4):489-495. doi: 10.1123/ijspp.2019-1032.
73) The MCT1 Gene Glu490Asp Polymorphism (rs1049434) Is Associated with Endurance Athlete Status, Lower Blood Lactate Accumulation, and Higher Maximum Oxygen Uptake
Guilherme JPLF, Bosnyák E, Semenova EA, Szmodis M, Griff A, Móra Á, Almási G, Trájer E, Udvardy A, Kostryukova ES, Borisov OV, Larin AK, Andryushchenko LB, Akimov EB, Generozov EV, Ahmetov II, Tóth M, Junior AHL
Biol Sport., 2021 Sep;38(3):465-474. doi: 10.5114/biolsport.2021.101638. Epub 2020 Dec 22.
74) Identification of Mutations Conferring Tryptanthrin Resistance to Mycobacterium smegmatis
Frolova SG, Klimina KM, Kumar R, Vatlin AA, Salunke DB, Kendrekar P, Danilenko VN, Maslov DA
Antibiotics., 2020 Dec 23;10(1):6. doi: 10.3390/antibiotics10010006.
75) Intestinal Microbiome Modulates the Response to Antitumor Immunotherapy
Olekhnovich EI, Manolov AI, Pavlenko AV, Konanov DN, Fedorov DE, Tikhonova PO, Glushchenko OE, Ilina EN
Biomed Khim., 2020 Jan;66(1):54-63. Russian. doi: 10.18097/PBMC20206601054.
76) Transcriptional Landscape of Staphylococcus aureusTranscriptional Landscape of Staphylococcus aureus Kayvirus Bacteriophage vB_SauM-515A1
Kornienko M, Fisunov G, Bespiatykh D, Kuptsov N, Gorodnichev R, Klimina K, Kulikov E, Ilina E, Letarov A, Shitikov E
Viruses. 2020 Nov 17;12(11):1320. doi: 10.3390/v12111320. Q2
77) Contribution of Podoviridae and Myoviridae bacteriophages to the effectiveness of anti-staphylococcal therapeutic cocktails
Kornienko M, Kuptsov N, Gorodnichev R, Bespiatykh D, Guliaev A, Letarova M, Kulikov E, Veselovsky V, Malakhova M, Letarov A, Ilina E, Shitikov E
Scientific Reports. 2020 Oct 29;10(1):18612. doi: 10.1038/s41598-020-75637-x. Q1
78) Metabolic Changes of Mycobacterium tuberculosisMetabolic Changes of Mycobacterium tuberculosis during the Anti-Tuberculosis Therapy
Bespyatykh J, Shitikov E, Bespiatykh D, Guliaev A, Klimina K, Veselovsky V, Arapidi G, Dogonadze M, Zhuravlev V, Ilina E, Govorun V
Pathogens. 2020 Feb 18;9(2):131. doi: 10.3390/pathogens9020131. Q1
79) Aureolic Acid Group of Agents as Potential Antituberculosis Drugs
Bespyatykh J, Bespiatykh D, Malakhova M, Klimina K, Bespyatykh A, Varizhuk A, Tevyashova A, Nikolenko T, Pozmogova G, Ilina E, Shitikov E
Antibiotics. 2020 Oct 19;9(10):715. doi: 10.3390/antibiotics9100715. Q1
80) Intestinal microbiome as a predictor of the anti-PD-1 therapy success: metagenomic data analysis
Fedorov DE, Olekhnovich EI, Pavlenko AV, Klimina KM, Pokataev IA, Manolov AI, Konanov DN, Veselovsky VA, Ilina EN
Biomeditsinskaya Khimiya. 2020 Nov;66(6):502–507. doi: 10.18097/PBMC20206606502. Russian. Q4
81) Gene Networks Underlying the Resistance of Bifidobacterium longumGene Networks Underlying the Resistance of Bifidobacterium longum to Inflammatory Factors
Veselovsky VA, Dyachkova MS, Menyaylo EA, Polyaeva PS, Olekhnovich EI, Shitikov EA, Bespiatykh DA, Semashko TA, Kasianov AS, Ilina EN, Danilenko VN, Klimina KM
Frontiers in Immunology. 2020 Nov 16;11:595877. doi: 10.3389/fimmu.2020.595877. Q1
82) Toxin-Antitoxin Systems: A Tool for Taxonomic Analysis of Human Intestinal Microbiota
Klimina KM, Voroshilova VN, Poluektova EU, Veselovsky VA, Yunes RA, Kovtun AS, Kudryavtseva AV, Kasianov AS, Danilenko VN
Toxins. 2020 Jun 12;12(6):388. doi: 10.3390/toxins12060388. Q1
83) miRNAs expression signature potentially associated with lymphatic dissemination in locally advanced prostate cancer
Pudova EA, Krasnov GS, Nyushko KM, Kobelyatskaya AA, Savvateeva MV, Poloznikov AA, Dolotkazin DR, Klimina KM, Guvatova ZG, Simanovsky SA, Gladysh NS, Tokarev AT, Melnikova NV, Dmitriev AA, Alekseev BY, Kaprin AD, Kiseleva MV, Snezhkina AV, Kudryavtseva AV
BMC Medical Genomics. 2020 Sep 18;13(Suppl 8):129. doi: 10.1186/s12920-020-00788-9. Q2
84) The ecogenomics of dsDNA bacteriophages in feces of stabled and feral horses
Babenko VV, Millard A, Kulikov EE, Spasskaya NN, Letarova MA, Konanov DN, Belalov IS, Letarov AV
Computational and Structural Biotechnology Journal. 2020 Nov 10;18:3457–3467. doi: 10.1016/j.csbj.2020.10.036. Q1
85) Correction to: Draft genome sequences of Hirudo medicinalis and salivary transcriptome of three closely related medicinal leeches
Babenko VV, Podgorny OV, Manuvera VA, Kasianov AS, Manolov AI, Grafskaia EN, Shirokov DA, Kurdyumov AS, Vinogradov DV, Nikitina AS, Kovalchuk SI, Anikanov NA, Butenko IO, Pobeguts OV, Matyushkina DS, Rakitina DV, Kostryukova ES, Zgoda VG, Baskova IP, Trukhan VM, Gelfand MS, Govorun VM, Schiöth HB, Lazarev VN
BMC Genomics. 2020 Jul 22;21(1):503. doi: 10.1186/s12864-020-06897-0. Erratum for: BMC Genomics. 2020 Apr 29;21(1):331. Q1
86) Novel Bradykinin-Potentiating Peptides and Three-Finger Toxins from Viper Venom: Combined NGS Venom Gland Transcriptomics and Quantitative Venom Proteomics of the Azemiops feae Viper
Babenko VV, Ziganshin RH, Weise C, Dyachenko I, Shaykhutdinova E, Murashev AN, Zhmak M, Starkov V, Hoang AN, Tsetlin V, Utkin Y
Biomedicines. 2020 Jul 28;8(8):249. doi: 10.3390/biomedicines8080249.
87) The Hirudo Medicinalis Microbiome Is a Source of New Antimicrobial Peptides
Grafskaia E, Pavlova E, Babenko VV, Latsis I, Malakhova M, Lavrenova V, Bashkirov P, Belousov D, Klinov D, Lazarev V
International Journal of Molecular Sciences. 2020 Sep 27;21(19):7141. doi: 10.3390/ijms21197141.
88) Genome Sequences of a Green-Colored Chlorobium phaeovibrioides Strain Containing Two Plasmids and a Closely Related Plasmid-Free Brown-Colored Strain
Boldyreva DI, Babenko VV, Kanygina AV, Lunina ON, Letarova MA, Kostryukova ES, Savvichev AS, Gorlenko VM, Letarov AV
Microbiology Resource Announcements. 2020 Jan 9;9(2):e01172-19. doi: 10.1128/MRA.01172-19.
89) Draft genome sequences of Hirudo medicinalis and salivary transcriptome of three closely related medicinal leeches
Babenko VV, Podgorny OV, Manuvera VA, Kasianov AS, Manolov AI, Grafskaia EN, Shirokov DA, Kurdyumov AS, Vinogradov DV, Nikitina AS, Kovalchuk SI, Anikanov NA, Butenko IO, Pobeguts OV, Matyushkina DS, Rakitina DV, Kostryukova ES, Zgoda VG, Baskova IP, Trukhan VM, Gelfand MS, Govorun VM, Schiöth HB, Lazarev VN
BMC Genomics. 2020 Apr 29;21(1):331. doi: 10.1186/s12864-020-6748-0. Erratum in: BMC Genomics. 2020 Jul 22;21(1):503.
90) Evaluation of metabolites levels in feces of patients with inflammatory bowel diseases
Zhgun ES, Kislun YV, Kalachniuk TN, Veselovsky VA, Urban AS, Tikhonova PO, Pavlenko AV, Ilchenko GN, Ilina EN
Biomeditsinskaya Khimiya. 2020 May;66(3):233–240. Russian. doi: 10.18097/PBMC20206603233.
91) Polygenic Profile of Elite Strength Athletes
Moreland E, Borisov OV, Semenova EA, Larin AK, Andryushchenko ON, Andryushchenko LB, Generozov EV, Williams AG, Ahmetov II
Journal of Strength and Conditioning Research. 2020 Dec 3. doi: 10.1519/JSC.0000000000003901.
92) The GALNTL6 Gene rs558129 Polymorphism Is Associated With Power Performance
Díaz Ramírez J, Álvarez-Herms J, Castañeda-Babarro A, Larruskain J, Ramírez de la Piscina X, Borisov OV, Semenova EA, Kostryukova ES, Kulemin NA, Andryushchenko ON, Larin AK, Andryushchenko LB, Generozov EV, Ahmetov II, Odriozola A
Journal of Strength and Conditioning Research. 2020 Nov;34(11):3031–3036. doi: 10.1519/JSC.0000000000003814.
93) Whole genome sequencing of elite athletes
Boulygina EA, Borisov OV, Valeeva EV, Semenova EA, Kostryukova ES, Kulemin NA, Larin AK, Nabiullina RM, Mavliev FA, Akhatov AM, Andryushchenko ON, Andryushchenko LB, Zmijewski P, Generozov EV, Ahmetov II
Biology of Sport. 2020 Sep;37(3):295–304. doi: 10.5114/biolsport.2020.96272.
94) Striated muscle-specific serine/threonine-protein kinase beta segregates with high versus low responsiveness to endurance exercise training
Kusić D, Connolly J, Kainulainen H, Semenova EA, Borisov OV, Larin AK, Popov DV, Generozov EV, Ahmetov II, Britton SL, Koch LG, Burniston JG
Physiological Genomics. 2020 Jan 1;52(1):35–46. doi: 10.1152/physiolgenomics.00103.2019.
95) The association of HFE gene H63D polymorphism with endurance athlete status and aerobic capacity: novel findings and a meta-analysis
Semenova EA, Miyamoto-Mikami E, Akimov EB, Al-Khelaifi F, Murakami H, Zempo H, Kostryukova ES, Kulemin NA, Larin AK, Borisov OV, Miyachi M, Popov DV, Boulygina EA, Takaragawa M, Kumagai H, Naito H, Pushkarev VP, Dyatlov DA, Lekontsev EV, Pushkareva YE, Andryushchenko LB, Elrayess MA, Generozov EV, Fuku N, Ahmetov II
European Journal of Applied Physiology. 2020 Mar;120(3):665–673. doi: 10.1007/s00421-020-04306-8.
96) Genome-Wide Association Study Reveals a Novel Association Between MYBPC3 Gene Polymorphism, Endurance Athlete Status, Aerobic Capacity and Steroid Metabolism
Al-Khelaifi F, Yousri NA, Diboun I, Semenova EA, Kostryukova ES, Kulemin NA, Borisov OV, Andryushchenko LB, Larin AK, Generozov EV, Miyamoto-Mikami E, Murakami H, Zempo H, Miyachi M, Takaragawa M, Kumagai H, Naito H, Fuku N, Abraham D, Hingorani A, Donati F, Botrè F, Georgakopoulos C, Suhre K, Ahmetov II, Albagha O, Elrayess MA
Frontiers in Genetics. 2020 Jun 16;11:595. doi: 10.3389/fgene.2020.00595.
97) DNA methylation across the genome in aged human skeletal muscle tissue and muscle-derived cells: the role of HOX genes and physical activity
Turner DC, Gorski PP, Maasar MF, Seaborne RA, Baumert P, Brown AD, Kitchen MO, Erskine RM, Dos-Remedios I, Voisin S, Eynon N, Sultanov RI, Borisov OV, Larin AK, Semenova EA, Popov DV, Generozov EV, Stewart CE, Drust B, Owens DJ, Ahmetov II, Sharples AP
Scientific Reports. 2020 Sep 21;10(1):15360. doi: 10.1038/s41598-020-72730-z.
Гранты РНФ
РНФ 23-75-10125 «Поиск путей коррекции кишечной микробиоты при иммунотерапии меланомы: бактериофаги как прогностические биомаркеры и терапевтические агенты» 2023-2026 гг.
РНФ 22-75-10029 «Микробиота кишечника и ответ на иммунотерапию злокачественных опухолей: от воспроизводимых биомаркеров к модуляции эффекта» 2022-2025 гг.
РНФ 21-15-00431 «Метагеномный анализ респираторного биотопа человека на фоне пандемической коронавирусной инфекции и в последующей сезонной динамике» 2021-2023 гг.
РНФ 19-74-00146 «Генные пути, вовлеченные в механизмы реализации устойчивости штамма Bifidobacterium longum GT15 к факторам иммунного ответа в условиях воспалительного процесса» 2019-2021 гг.
РНФ 15-14-00066 «Оценка вариабельности резистома микробиоты кишечника у жителей РФ для обнаружения путей передачи и распространения антибиоткорезистентности»
Госзадания ФМБА России
Шифр «Младенцы» «Оценка вклада хронических заболеваний матери в динамику изменения биоразнообразия микробиоты кишечника недоношенных детей» 2019-2020 гг.
Субсидии Минестерства Науки и Образования:
Соглашение Министерства Науки и Образования 05.604.21.0215 «Разработка метода оценки метагеномных маркеров микробиоты кишечника человека, ассоциированных с ответом на иммунотерапию рака» 2022-2021 гг.
Участие в грантах РНФ:
РНФ 25-15-68065 «Бактериофаги и антибиотики: путь к повышению эффективности терапии инфекций, вызванных Staphylococcus aureus», 2025-2026 гг.
РНФ 24-15-00514 «Микобактериофаги как потенциальные терапевтические агенты в борьбе с туберкулезом», 2024-2026 гг.
РНФ 22-75-10089 «Исследование механизмов действия противотуберкулезных препаратов с использованием омиксных технологий» 2022-2025 гг.
РНФ 22-15-00443 «Бактериофаги и антибиотики: путь к повышению эффективности терапии инфекций, вызванных Staphylococcus aureus», 2022-2025 гг.
РНФ 19-75-10109 «Геномные G-квадруплексы Mycobacterium tuberculosis как потенциальные мишени новых противотуберкулезных препаратов» 2019-2022 гг.
РНФ 17-15-01412 «Системное исследование клональных групп Mycobacterium tuberculosis семейства Beijing, циркулирующих на территории РФ» 2017-2019 гг.
РНФ 17-75-20060 «Поиск биомишеней потенциальных противотуберкулезных препаратов класса азоло[1,2,4,5]тетразинов»
РНФ 23-75-10125 «Поиск путей коррекции кишечной микробиоты при иммунотерапии меланомы: бактериофаги как прогностические биомаркеры и терапевтические агенты» 2023-2026 гг.
РНФ 22-75-10029 «Микробиота кишечника и ответ на иммунотерапию злокачественных опухолей: от воспроизводимых биомаркеров к модуляции эффекта» 2022-2025 гг.
РНФ 21-15-00431 «Метагеномный анализ респираторного биотопа человека на фоне пандемической коронавирусной инфекции и в последующей сезонной динамике» 2021-2023 гг.
РНФ 19-74-00146 «Генные пути, вовлеченные в механизмы реализации устойчивости штамма Bifidobacterium longum GT15 к факторам иммунного ответа в условиях воспалительного процесса» 2019-2021 гг.
РНФ 15-14-00066 «Оценка вариабельности резистома микробиоты кишечника у жителей РФ для обнаружения путей передачи и распространения антибиоткорезистентности»
Госзадания ФМБА России
Шифр «Младенцы» «Оценка вклада хронических заболеваний матери в динамику изменения биоразнообразия микробиоты кишечника недоношенных детей» 2019-2020 гг.
Субсидии Минестерства Науки и Образования:
Соглашение Министерства Науки и Образования 05.604.21.0215 «Разработка метода оценки метагеномных маркеров микробиоты кишечника человека, ассоциированных с ответом на иммунотерапию рака» 2022-2021 гг.
Участие в грантах РНФ:
РНФ 25-15-68065 «Бактериофаги и антибиотики: путь к повышению эффективности терапии инфекций, вызванных Staphylococcus aureus», 2025-2026 гг.
РНФ 24-15-00514 «Микобактериофаги как потенциальные терапевтические агенты в борьбе с туберкулезом», 2024-2026 гг.
РНФ 22-75-10089 «Исследование механизмов действия противотуберкулезных препаратов с использованием омиксных технологий» 2022-2025 гг.
РНФ 22-15-00443 «Бактериофаги и антибиотики: путь к повышению эффективности терапии инфекций, вызванных Staphylococcus aureus», 2022-2025 гг.
РНФ 19-75-10109 «Геномные G-квадруплексы Mycobacterium tuberculosis как потенциальные мишени новых противотуберкулезных препаратов» 2019-2022 гг.
РНФ 17-15-01412 «Системное исследование клональных групп Mycobacterium tuberculosis семейства Beijing, циркулирующих на территории РФ» 2017-2019 гг.
РНФ 17-75-20060 «Поиск биомишеней потенциальных противотуберкулезных препаратов класса азоло[1,2,4,5]тетразинов»
